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RNAi Experiment: Cenix:329-e11 Ace View of Cenix:329-e11
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K10D2.7
Description of "K10D2.7"  Associated GO Term : sulfur metabolism
KOG Annotation  Molybdopterin converting factor, small subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:5195887..5196735)
Transcript overlap: 255 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 150
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.469
Wormbase (BLAST) RNAi primary
External "K10D2.7" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  K10D2.1
Description of "K10D2.1"  Associated GO Term : transcription regulator activity
KOG Annotation  Protein phosphatase 1, regulatory subunit, and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:5195887..5196735)
Transcript overlap: 99 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 78
Relative score: 0.52 (Best raw score= for Gene )
Specificity index: 0.244
External "K10D2.1" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  K10D2.6 (emb-8)
Description of "K10D2.6"  Uncloned locus required for embryonic viability, for the normal generation of anterior-posterior asymmetry in the early embryo, and for normal P Granule and GLP-1 asymmetry in early embryos.
KOG Annotation  NADP/FAD dependent oxidoreductase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:5195887..5196735)
Transcript overlap: 92 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 92
Relative score: 0.613 (Best raw score= for Gene )
Specificity index: 0.287
External "K10D2.6" Links  Wormbase NCBI Phenobank 1
Cenix:329-e11 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
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hosting these data.)
/static/images/movie.gif /static/images/movie.gif
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Cenix:329-e11 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:329-e11 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of K10D2.7 Browse using GBrowse
Gene Graph
Gene Plot of K10D2.1 Browse using GBrowse
Gene Graph
Gene Plot of K10D2.6 Browse using GBrowse
Gene Graph