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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:331-e11 Ace View of Cenix:331-e11
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y75B8A.1 (php-3)
Description of "Y75B8A.1"  Associated GO Term : DNA binding
KOG Annotation  Transcription factor Abd-B, contains HOX domain
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:12075331..12077578)
Transcript overlap: 798 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 734
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.91
Wormbase (BLAST) RNAi primary
External "Y75B8A.1" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F12A10.6
KOG Annotation  Serine/threonine kinase (haspin family)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 73
Relative score: 0.099 (Best raw score= for Gene )
Specificity index: 0.09
External "F12A10.6" Links  Wormbase NCBI Phenobank 1
Cenix:331-e11 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
(Please note that RNAiDB is not
hosting these data.)
/static/images/movie.gif /static/images/movie.gif /static/images/movie.gif
Help
Cenix:331-e11 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:331-e11 (PCR_reagent)
Remark  early embryonic: Overall wildtype.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y75B8A.1 Browse using GBrowse
Gene Graph
Gene Plot of F12A10.6 Browse using GBrowse
Gene Graph