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RNAi Experiment: Cenix:332-d1 Ace View of Cenix:332-d1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y56A3A.18
Description of "Y56A3A.18"  Associated GO Term : nucleic acid binding
KOG Annotation  U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (III:11917821..11919165)
Transcript overlap: 395 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 354
Relative score: 0.837 (Best raw score= for Gene )
Specificity index: 0.456
Wormbase (BLAST) RNAi primary
External "Y56A3A.18" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y56A3A.20 (ccf-1)
Description of "Y56A3A.20"  a homolog of subunit 7 of CCR4-NOT transcription complex from S. cerevisiae.
KOG Annotation  mRNA deadenylase subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:11917821..11919165)
Transcript overlap: 444 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 423
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.544
Wormbase (BLAST) RNAi primary
External "Y56A3A.20" Links  Wormbase NCBI Phenobank 1 2
Cenix:332-d1 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  WT_postembryonic_morphology
External Movies 
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hosting these data.)
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Cenix:332-d1 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:332-d1 (PCR_reagent)
Remark  early embryonic: No significant defects.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y56A3A.18 Browse using GBrowse
Gene Graph
Gene Plot of Y56A3A.20 Browse using GBrowse
Gene Graph