Link to Y56A3A.19Link to Y56A3A.17aLink to Y56A3A.17bRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y56A3A.17aLink to Y56A3A.17bLink to Y56A3A.18.2Link to Y56A3A.18.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:333-b10 Ace View of Cenix:333-b10
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y56A3A.19
Description of "Y56A3A.19"  Associated GO Term : acyl carrier activity
KOG Annotation  Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:11914299..11915895)
Transcript overlap: 508 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 445
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.775
Wormbase (BLAST) RNAi primary
External "Y56A3A.19" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  Y56A3A.17 (npp-16)
KOG Annotation  Nuclear pore complex component NPAP60L/NUP50
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:11914299..11915895)
Transcript overlap: 129 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 129
Relative score: 0.29 (Best raw score= for Gene )
Specificity index: 0.225
Wormbase (BLAST) RNAi primary
External "Y56A3A.17" Links  Wormbase NCBI Phenobank 1 2 3
Cenix:333-b10 Phenotypes Help with Phenotypes
Phenotype  Larval Arrest-Early (L1/L2)
External Movies 
(Please note that RNAiDB is not
hosting these data.)
/static/images/movie.gif /static/images/movie.gif /static/images/movie.gif
Help
Cenix:333-b10 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:333-b10 (PCR_reagent)
Remark  early embryonic: No signficant defects.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y56A3A.19 Browse using GBrowse
Gene Graph
Gene Plot of Y56A3A.17 Browse using GBrowse
Gene Graph