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RNAi Experiment: Cenix:333-b2 Ace View of Cenix:333-b2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y111B2A.18 (rsp-3)
Description of "Y111B2A.18"  rsp-3 encodes a putative ortholog of human SF2/ASF and member of the SR protein family of nuclear phosphoproteins that are required for constitutive splicing and influence alternative splicing regulation; rsp-3 affects the development of oocytes together with rsr-1, and is required for late embryonic viability; SPK-1 binds directly to and phosphorylates the RS domain of RSP-3 in vitro and the mRNA of rsp-3 is predominantly expressed in the germline.
KOG Annotation  Alternative splicing factor ASF/SF2 (RRM superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:12686001..12686989)
Transcript overlap: 862 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 841
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.726
Wormbase (BLAST) RNAi primary
External "Y111B2A.18" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y111B2A.17
Description of "Y111B2A.17"  Associated GO Term : structural constituent of ribosome
KOG Annotation  RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:12686001..12686989)
Transcript overlap: 110 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 89
Relative score: 0.377 (Best raw score= for Gene )
Specificity index: 0.274
Wormbase (BLAST) RNAi primary
External "Y111B2A.17" Links  Wormbase NCBI Phenobank 1 2
Cenix:333-b2 Phenotypes Help with Phenotypes
Phenotype  Larval Lethal-Early (L1/L2)
External Movies 
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Cenix:333-b2 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:333-b2 (PCR_reagent)
Remark  post-embryonic: Larval Lethal-Early (L1/L2)
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y111B2A.17 Browse using GBrowse
Gene Graph
Gene Plot of Y111B2A.18 Browse using GBrowse
Gene Graph