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RNAi Experiment: Cenix:333-c5 Ace View of Cenix:333-c5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y47D3A.6 (tra-1)
Description of "Y47D3A.6"  The tra-1 gene encodes a homolog of human GLI3, which when mutated leads to either Greig cephalopolysyndactyly syndrome or Pallister-Hall syndrome (OMIM:165240).
KOG Annotation  Zn-finger
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:11194012..11195624)
Transcript overlap: 254 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 212
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y47D3A.6" Links  Wormbase NCBI Phenobank 1 2
Cenix:333-c5 Phenotypes Help with Phenotypes
Phenotype  Larval Lethal-Early (L1/L2)
External Movies 
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Cenix:333-c5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:333-c5 (PCR_reagent)
Remark  post-embryonic: Larval Lethal-Early (L1/L2)
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y47D3A.6 Browse using GBrowse
Gene Graph