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RNAi Experiment: Cenix:333-d10 Ace View of Cenix:333-d10
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y75B8A.35 (zip-1)
Description of "Y75B8A.35"  zip-1 encodes a protein with weak similarity to basic-leucine zipper-type transcription factors; ZIP-1 was identified in a screen for proteins able to bind a pharyngeal muscle-specific enhancer in the promoter of myo-2, which encodes a pharyngeal muscle-specific myosin; as loss of ZIP-1 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, ZIP-1 may function redundantly in pharyngeal muscle specification; ZIP-1 is expressed strongly in the pharynx, but is also detected in hypodermal seam cells, vulval muscles, and posterior cells near the rectum.
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:12342472..12344874)
Transcript overlap: 616 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 553
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y75B8A.35" Links  Wormbase NCBI Phenobank 1 2
Cenix:333-d10 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:333-d10 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:333-d10 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y75B8A.35 Browse using GBrowse
Gene Graph