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RNAi Experiment: Cenix:333-e1 Ace View of Cenix:333-e1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y111B2A.3
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:12495243..12496833)
Transcript overlap: 735 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 651
Relative score: 0.624 (Best raw score=651 for Gene Y111B2A.3)
Specificity index: 0.316
Wormbase (BLAST) RNAi primary
External "Y111B2A.3" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  Y111B2A.1
Description of "Y111B2A.1"  Associated GO Term : protein kinase activity
KOG Annotation  LAMMER dual specificity kinases
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:12495243..12496833)
Transcript overlap: 211 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 148
Relative score: 0.348 (Best raw score= for Gene )
Specificity index: 0.177
Wormbase (BLAST) RNAi primary
External "Y111B2A.1" Links  Wormbase NCBI Phenobank 1 2 3
Gene Inhibited  Y111B2A.2
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (III:12495243..12496833)
Transcript overlap: 509 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 425
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.507
Wormbase (BLAST) RNAi primary
External "Y111B2A.2" Links  Wormbase NCBI Phenobank 1 2 3
Cenix:333-e1 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:333-e1 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:333-e1 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y111B2A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y111B2A.1 Browse using GBrowse
Gene Graph
Gene Plot of Y111B2A.3 Browse using GBrowse
Gene Graph