Link to C30A5.5Link to C30A5.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZK795.4geneMap RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F39E9.5RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F14H8.3Link to F49F1.13Link to D1081.1Link to M03D4.5Link to C18C4.4Link to C17H12.7Link to T27C4.5Link to ZK682.1Link to Y113G7A.7Link to R04B5.2Link to C52D10.4Link to F46F5.3geneMap Link to F46F5.14RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F14H8.3Link to F49F1.13Link to D1081.1Link to M03D4.5Link to C18C4.4Link to C17H12.7Link to T27C4.5Link to F39E9.5Link to Y113G7A.7Link to R04B5.2Link to C52D10.4Link to C28D4.6geneMap Link to F14H8.4RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C18C4.4Link to D1081.1Link to F49F1.13Link to F14H8.3Link to R04B5.2Link to T27C4.5Link to Y113G7A.7Link to F46F5.3Link to M03D4.5Link to C17H12.7Link to R04D3.11geneMap Link to R07C12.3RNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to ZK795.3Link to ZK795.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to T27C4.2RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to D1081.1Link to F14H8.3Link to C52D10.4Link to F49F1.13Link to R04B5.2Link to C18C4.4Link to Y113G7A.7Link to F46F5.3Link to M03D4.5Link to C17H12.7Link to ZK682.1Link to R04D3.11geneMap RNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:334-b2 Ace View of Cenix:334-b2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C30A5.5 (snb-5)
Description of "C30A5.5"  snb-5 encodes a predicted synaptobrevin.
KOG Annotation  Synaptobrevin/VAMP-like protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:8202776..8205241)
Transcript overlap: 309 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 225
Relative score: 0.239 (Best raw score= for Gene )
Specificity index: 0.024
Wormbase (BLAST) RNAi primary
External "C30A5.5" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  C17H12.7
Evidence for Inhibition 
Sliding Window Raw score: 943
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.101
External "C17H12.7" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  R04D3.11 (srd-37)
Evidence for Inhibition 
Sliding Window Raw score: 404
Relative score: 0.428 (Best raw score= for Gene )
Specificity index: 0.043
External "R04D3.11" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F39E9.5
Evidence for Inhibition 
Sliding Window Raw score: 512
Relative score: 0.543 (Best raw score= for Gene )
Specificity index: 0.055
External "F39E9.5" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F46F5.3
Evidence for Inhibition 
Sliding Window Raw score: 135
Relative score: 0.143 (Best raw score= for Gene )
Specificity index: 0.014
External "F46F5.3" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F14H8.3
Evidence for Inhibition 
Sliding Window Raw score: 921
Relative score: 0.977 (Best raw score= for Gene )
Specificity index: 0.099
External "F14H8.3" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  C52D10.4
Evidence for Inhibition 
Sliding Window Raw score: 923
Relative score: 0.979 (Best raw score= for Gene )
Specificity index: 0.099
External "C52D10.4" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F49F1.13
Evidence for Inhibition 
Sliding Window Raw score: 457
Relative score: 0.485 (Best raw score= for Gene )
Specificity index: 0.049
External "F49F1.13" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  C18C4.4
Evidence for Inhibition 
Sliding Window Raw score: 910
Relative score: 0.965 (Best raw score= for Gene )
Specificity index: 0.098
External "C18C4.4" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  ZK795.4
Description of "ZK795.4"  Associated GO Term : vesicle-mediated transport
Evidence for Inhibition 
Sliding Window Raw score: 266
Relative score: 0.282 (Best raw score= for Gene )
Specificity index: 0.029
Wormbase (BLAST) RNAi primary
External "ZK795.4" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  C17C3.14
Evidence for Inhibition 
Sliding Window Raw score: 128
Relative score: 0.136 (Best raw score= for Gene )
Specificity index: 0.014
External "C17C3.14" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  R04B5.2
Evidence for Inhibition 
Sliding Window Raw score: 838
Relative score: 0.889 (Best raw score= for Gene )
Specificity index: 0.09
External "R04B5.2" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  D1081.1
Evidence for Inhibition 
Sliding Window Raw score: 891
Relative score: 0.945 (Best raw score= for Gene )
Specificity index: 0.095
External "D1081.1" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y113G7A.7
Evidence for Inhibition 
Sliding Window Raw score: 347
Relative score: 0.368 (Best raw score= for Gene )
Specificity index: 0.037
External "Y113G7A.7" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  T27C4.5
Evidence for Inhibition 
Sliding Window Raw score: 502
Relative score: 0.532 (Best raw score= for Gene )
Specificity index: 0.054
External "T27C4.5" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  R13H7.3
Evidence for Inhibition 
Sliding Window Raw score: 259
Relative score: 0.275 (Best raw score= for Gene )
Specificity index: 0.028
External "R13H7.3" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  M03D4.5
Evidence for Inhibition 
Sliding Window Raw score: 503
Relative score: 0.533 (Best raw score= for Gene )
Specificity index: 0.054
External "M03D4.5" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  C28D4.6
Evidence for Inhibition 
Sliding Window Raw score: 166
Relative score: 0.176 (Best raw score= for Gene )
Specificity index: 0.018
External "C28D4.6" Links  Wormbase NCBI Phenobank 1 2
Cenix:334-b2 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:334-b2 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:334-b2 (PCR_reagent)
Remark  early embryonic: No significant defects.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of C17H12.7 Browse using GBrowse
Gene Graph
Gene Plot of R04D3.11 Browse using GBrowse
Gene Graph
Gene Plot of F39E9.5 Browse using GBrowse
Gene Graph
Gene Plot of F46F5.3 Browse using GBrowse
Gene Graph
Gene Plot of C52D10.4 Browse using GBrowse
Gene Graph
Gene Plot of F14H8.3 Browse using GBrowse
Gene Graph
Gene Plot of F49F1.13 Browse using GBrowse
Gene Graph
Gene Plot of C17C3.14 Browse using GBrowse
Gene Graph
Gene Plot of ZK795.4 Browse using GBrowse
Gene Graph
Gene Plot of C18C4.4 Browse using GBrowse
Gene Graph
Gene Plot of R04B5.2 Browse using GBrowse
Gene Graph
Gene Plot of D1081.1 Browse using GBrowse
Gene Graph
Gene Plot of Y113G7A.7 Browse using GBrowse
Gene Graph
Gene Plot of T27C4.5 Browse using GBrowse
Gene Graph
Gene Plot of R13H7.3 Browse using GBrowse
Gene Graph
Gene Plot of M03D4.5 Browse using GBrowse
Gene Graph
Gene Plot of C28D4.6 Browse using GBrowse
Gene Graph
Gene Plot of C30A5.5 Browse using GBrowse
Gene Graph