Link to M01F1.8aLink to M01F1.8bRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to M01F1.2.2Link to M01F1.2.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to M01F1.3.1Link to M01F1.2.2Link to M01F1.2.1geneMap Link to M01F1.2.1Link to M01F1.2.2Link to M01F1.3.1Link to M01F1.3.3Link to M01F1.3.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to M01F1.3.1Link to M01F1.2.2Link to M01F1.2.1geneMap
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RNAi Experiment: Cenix:335-a2 Ace View of Cenix:335-a2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  M01F1.8
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:3502126..3502900)
Transcript overlap: 351 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 307
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.646
Wormbase (BLAST) RNAi primary
External "M01F1.8" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  M01F1.2 (rpl-16)
Description of "M01F1.2"  rpl-16 encodes a large ribosomal subunit L13a protein.
KOG Annotation  60S ribosomal protein L13a
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:3502126..3502900)
Transcript overlap: 80 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 80
Relative score: 0.278 (Best raw score= for Gene )
Specificity index: 0.179
Wormbase (BLAST) RNAi primary
External "M01F1.2" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  M01F1.3
Description of "M01F1.3"  This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial.
KOG Annotation  Lipoate synthase
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 78 nt Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 78
Relative score: 0.271 (Best raw score= for Gene )
Specificity index: 0.175
External "M01F1.3" Links  Wormbase NCBI Phenobank 1 2
Cenix:335-a2 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:335-a2 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:335-a2 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of M01F1.8 Browse using GBrowse
Gene Graph
Gene Plot of M01F1.3 Browse using GBrowse
Gene Graph
Gene Plot of M01F1.2 Browse using GBrowse
Gene Graph