Link to Y119D3B.3Link to ZC47.7RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y119D3B.19geneMap Link to ZC47.6RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZC47.3Link to ZC47.4Link to ZC47.14geneMap Link to Y119D3B.5Link to Y119D3B.19RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZC47.7geneMap
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RNAi Experiment: Cenix:335-b6 Ace View of Cenix:335-b6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  ZC47.7
Description of "ZC47.7"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:1266274..1267516)
Transcript overlap: 527 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 464
Relative score: 0.957 (Best raw score= for Gene )
Specificity index: 0.432
Wormbase (BLAST) RNAi primary
External "ZC47.7" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  ZC47.6
Description of "ZC47.6"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:1266274..1267516)
Transcript overlap: 124 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 124
Relative score: 0.256 (Best raw score= for Gene )
Specificity index: 0.116
Wormbase (BLAST) RNAi primary
External "ZC47.6" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y119D3B.19
Description of "Y119D3B.19"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Evidence for Inhibition 
Sliding Window Raw score: 485
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.452
Wormbase (BLAST) RNAi primary
External "Y119D3B.19" Links  Wormbase NCBI Phenobank 1 2
Cenix:335-b6 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:335-b6 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:335-b6 (PCR_reagent)
Remark  wild type
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of ZC47.6 Browse using GBrowse
Gene Graph
Gene Plot of Y119D3B.19 Browse using GBrowse
Gene Graph
Gene Plot of ZC47.7 Browse using GBrowse
Gene Graph