Link to W05G11.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to T07F10.2Link to T24A6.1Link to ZK678.3geneMap Link to ZK678.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to T24A6.1Link to C04C3.4Link to T07F10.5Link to C03B8.2Link to W02F12.1Link to W05G11.2geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to T24A6.2Link to T24A6.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to W05G11.2Link to C04C3.4Link to C03B8.2Link to ZK678.3Link to W02F12.1geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZK1225.7Link to W02A11.6Link to F27D4.3Link to ZK507.6Link to T07F10.5Link to F23H12.10geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C04C3.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C03B8.2Link to T07F10.5Link to ZK678.3Link to W02F12.1Link to T24A6.1geneMap Link to T07F10.2Link to T07F10.5RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to W02A11.6Link to W05G11.2Link to F59H6.7Link to F08F1.9Link to C04C3.4Link to C03B8.2Link to ZK678.3Link to T24A6.1Link to F23H12.10Link to T07F10.2geneMap Link to ZK507.4Link to ZK507.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F23H12.10Link to C03B8.2Link to F27D4.3Link to W02F12.1Link to F08F1.9Link to C04C3.4Link to ZK1225.7Link to W02A11.6Link to C02B8.1.1geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:335-c11 Ace View of Cenix:335-c11
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  W05G11.2
Description of "W05G11.2"  Associated GO Term : regulation of cell cycle
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:57488..58957)
Transcript overlap: 656 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 530
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.264
Wormbase (BLAST) RNAi primary
External "W05G11.2" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  ZK678.3
Description of "ZK678.3"  Associated GO Term : regulation of cell cycle
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 110
Relative score: 0.208 (Best raw score= for Gene )
Specificity index: 0.055
Wormbase (BLAST) RNAi secondary
External "ZK678.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  W02A11.6
Evidence for Inhibition 
Sliding Window Raw score: 227
Relative score: 0.428 (Best raw score= for Gene )
Specificity index: 0.113
Wormbase (BLAST) RNAi primary
External "W02A11.6" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  T24A6.1
Evidence for Inhibition 
Sliding Window Raw score: 74
Relative score: 0.14 (Best raw score= for Gene )
Specificity index: 0.037
Wormbase (BLAST) RNAi secondary
External "T24A6.1" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  W02F12.1
Evidence for Inhibition 
Sliding Window Raw score: 122
Relative score: 0.23 (Best raw score= for Gene )
Specificity index: 0.061
Wormbase (BLAST) RNAi secondary
External "W02F12.1" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  ZK1225.7
Evidence for Inhibition 
Sliding Window Raw score: 289
Relative score: 0.545 (Best raw score= for Gene )
Specificity index: 0.144
Wormbase (BLAST) RNAi secondary
External "ZK1225.7" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F23H12.10
Evidence for Inhibition 
Sliding Window Raw score: 80
Relative score: 0.151 (Best raw score= for Gene )
Specificity index: 0.04
Wormbase (BLAST) RNAi primary
External "F23H12.10" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  C04C3.4
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 67
Relative score: 0.126 (Best raw score= for Gene )
Specificity index: 0.033
Wormbase (BLAST) RNAi primary
External "C04C3.4" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  T07F10.5
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 187
Relative score: 0.353 (Best raw score= for Gene )
Specificity index: 0.093
Wormbase (BLAST) RNAi secondary
External "T07F10.5" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  ZK507.6
Description of "ZK507.6"  Associated GO Term : regulation of cell cycle
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 71
Relative score: 0.134 (Best raw score= for Gene )
Specificity index: 0.035
Wormbase (BLAST) RNAi secondary
External "ZK507.6" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F27D4.3
Evidence for Inhibition 
Sliding Window Raw score: 249
Relative score: 0.47 (Best raw score= for Gene )
Specificity index: 0.124
External "F27D4.3" Links  Wormbase NCBI Phenobank 1
Cenix:335-c11 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Chromosome Segregation (karyomeres) abnormal
External Movies 
(Please note that RNAiDB is not
hosting these data.)
/static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif
/static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif
Help
Cenix:335-c11 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:335-c11 (PCR_reagent)
Remark  early embryonic: Chromosome Segregation (karyomeres)
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of ZK678.3 Browse using GBrowse
Gene Graph
Gene Plot of W05G11.2 Browse using GBrowse
Gene Graph
Gene Plot of W02A11.6 Browse using GBrowse
Gene Graph
Gene Plot of T24A6.1 Browse using GBrowse
Gene Graph
Gene Plot of ZK1225.7 Browse using GBrowse
Gene Graph
Gene Plot of W02F12.1 Browse using GBrowse
Gene Graph
Gene Plot of F23H12.10 Browse using GBrowse
Gene Graph
Gene Plot of C04C3.4 Browse using GBrowse
Gene Graph
Gene Plot of F27D4.3 Browse using GBrowse
Gene Graph
Gene Plot of ZK507.6 Browse using GBrowse
Gene Graph
Gene Plot of T07F10.5 Browse using GBrowse
Gene Graph