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RNAi Experiment: Cenix:336-c1 Ace View of Cenix:336-c1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  BE10.4
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:12814588..12816857)
Transcript overlap: 733 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 649
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.861
Wormbase (BLAST) RNAi primary
External "BE10.4" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y37D8A.1 (arx-5)
Description of "Y37D8A.1"  Associated GO Term : regulation of actin polymerization
KOG Annotation  Actin-related protein Arp2/3 complex, subunit ARPC3
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:12814588..12816857)
Transcript overlap: 147 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 105
Relative score: 0.162 (Best raw score= for Gene )
Specificity index: 0.139
Wormbase (BLAST) RNAi primary
External "Y37D8A.1" Links  Wormbase NCBI Phenobank 1 2
Cenix:336-c1 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:336-c1 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:336-c1 (PCR_reagent)
Remark  early embryonic: No significant defects.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of BE10.4 Browse using GBrowse
Gene Graph
Gene Plot of Y37D8A.1 Browse using GBrowse
Gene Graph