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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:340-b4 Ace View of Cenix:340-b4
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y111B2A.12
Description of "Y111B2A.12"  Associated GO Term : glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
KOG Annotation  Angio-associated migratory cell protein (contains WD40 repeats)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:12608772..12610540)
Transcript overlap: 457 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 373
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.481
Wormbase (BLAST) RNAi primary
External "Y111B2A.12" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F19B2.4 (srz-36)
Evidence for Inhibition 
Sliding Window Raw score: 79
Relative score: 0.212 (Best raw score= for Gene )
Specificity index: 0.102
External "F19B2.4" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  K07E8.12 (sri-44)
Evidence for Inhibition 
Sliding Window Raw score: 324
Relative score: 0.869 (Best raw score= for Gene )
Specificity index: 0.418
External "K07E8.12" Links  Wormbase NCBI Phenobank 1
Cenix:340-b4 Phenotypes Help with Phenotypes
Phenotype  Larval Arrest-Early (L1/L2)
External Movies 
(Please note that RNAiDB is not
hosting these data.)
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Cenix:340-b4 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:340-b4 (PCR_reagent)
Remark  early embryonic: No significant defects.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of K07E8.12 Browse using GBrowse
Gene Graph
Gene Plot of F19B2.4 Browse using GBrowse
Gene Graph
Gene Plot of Y111B2A.12 Browse using GBrowse
Gene Graph