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RNAi Experiment: Cenix:342-g1 Ace View of Cenix:342-g1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F48E8.5 (paa-1)
Description of "F48E8.5"  paa-1 encodes a homolog of PR65, the structural subunit of protein phosphatase 2A (PP2A); PAA-1 protein is bound by SMG-5; PAA-1 is required in mass RNAi assays for embryonic viability, fertility, and cuticular integrity.
KOG Annotation  Protein phosphatase 2A regulatory subunit A and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:5450689..5451669)
Transcript overlap: 930 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 888
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F48E8.5" Links  Wormbase NCBI Phenobank 1
Cenix:342-g1 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Complex Phenotype
External Movies 
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Cenix:342-g1 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:342-g1 (PCR_reagent)
Remark  early embryonic: Complex Phenotype
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F48E8.5 Browse using GBrowse
Gene Graph