| RNAi Experiment: Cenix:38-f4 |
Ace View of Cenix:38-f4
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| Genes Inhibited |
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| Gene Inhibited |
Y116A8C.42 (snr-1) |
| Description of "Y116A8C.42" |
snr-1 encodes an ortholog of human small nuclear ribonucleoprotein Sm D3, a protein that forms part of a heptameric complex required for the biogenesis and function of the snRNPs that catalyze mRNA splicing; in combination with the gene that encodes the human Sm B ortholog (snr-2) snr-1 affects embryonic viability and the nuclear association and localization of P granules in embryos based on an RNAi assay, and also affects embryonic viability, growth, and fertility based on large-scale RNAi assays; snr-1 is expressed in embryos and is expressed in larvae and adults in muscles of the alimentary system, in body-wall muscle, in seam cells and other unidentified cells in larvae and in adults. |
| KOG Annotation |
Small nuclear ribonucleoprotein Sm D3
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| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (IV:17087979..17088535)
Transcript overlap: 425 nt |
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| Sliding Window |
Raw score: 362
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene) |
| Wormbase (BLAST) |
RNAi primary |
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| External "Y116A8C.42" Links |
   1 |
| Cenix:38-f4 Phenotypes |
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| Embryonic |
Emb Penetrance None reported |
| Phenotype |
Osmotic Integrity defective
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External Movies
(Please note that RNAiDB is not
hosting these data.) |
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| Cenix:38-f4 Experiment Details |
Ace View |
| Laboratory |
TH |
| RNAi Reagent & Type |
Cenix:38-f4 (PCR_reagent) |
| Remark |
early embryonic: Osmotic Integrity |
| Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
| Delivery Method |
Injection |
| Date |
2005-3-24 |
| Gene Plot of Y116A8C.42 |
Browse using GBrowse
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