Link to T12G3.4Link to T12G3.8RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to T12G3.4Link to T12G3.8Link to K08E4.1RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:38-h9 Ace View of Cenix:38-h9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T12G3.4
Description of "T12G3.4"  Associated GO Term : strictosidine synthase activity
KOG Annotation  Predicted alkaloid synthase/Surface mucin Hemomucin
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:12049252..12050018)
Transcript overlap: 602 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 581
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.859
Wormbase (BLAST) RNAi primary
External "T12G3.4" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  T12G3.8 (bre-5)
Description of "T12G3.8"  The bre-5 gene encodes a putative beta-1,3-galactosyltransferase that is predicted to transfer galactose onto proteins or lipids; BRE-5 is required for Cry5B toxicity.
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (IV:12049252..12050018)
Transcript overlap: 116 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 95
Relative score: 0.164 (Best raw score= for Gene )
Specificity index: 0.141
Wormbase (BLAST) RNAi primary
External "T12G3.8" Links  Wormbase NCBI Phenobank 1 2
Cenix:38-h9 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:38-h9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:38-h9 (PCR_reagent)
Remark  3/3 tests are wildtype.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of T12G3.8 Browse using GBrowse
Gene Graph
Gene Plot of T12G3.4 Browse using GBrowse
Gene Graph