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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Cenix:39-e12 Ace View of Cenix:39-e12
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C24F3.6 (col-124)
Description of "C24F3.6"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:10216710..10217400)
Transcript overlap: 691 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 628
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.31
Wormbase (BLAST) RNAi primary
External "C24F3.6" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  Y41E3.2 (dpy-4)
Description of "Y41E3.2"  dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 81
Relative score: 0.129 (Best raw score= for Gene )
Specificity index: 0.04
External "Y41E3.2" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  EGAP7.1 (dpy-3)
Description of "EGAP7.1"  dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 78
Relative score: 0.124 (Best raw score= for Gene )
Specificity index: 0.039
External "EGAP7.1" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F57B1.4 (col-160)
Description of "F57B1.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 109
Relative score: 0.174 (Best raw score= for Gene )
Specificity index: 0.054
External "F57B1.4" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  T21B4.2 (col-85)
Description of "T21B4.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 376
Relative score: 0.599 (Best raw score= for Gene )
Specificity index: 0.186
External "T21B4.2" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F38A3.2 (ram-2)
Description of "F38A3.2"  ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 131
Relative score: 0.209 (Best raw score= for Gene )
Specificity index: 0.065
External "F38A3.2" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  C53B4.5 (col-119)
Description of "C53B4.5"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 112
Relative score: 0.178 (Best raw score= for Gene )
Specificity index: 0.055
External "C53B4.5" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F57B1.3 (col-159)
Description of "F57B1.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 88
Relative score: 0.14 (Best raw score= for Gene )
Specificity index: 0.043
External "F57B1.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  C18H7.3 (col-102)
Description of "C18H7.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 279
Relative score: 0.444 (Best raw score= for Gene )
Specificity index: 0.138
External "C18H7.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  T28F2.8 (col-51)
Description of "T28F2.8"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 142
Relative score: 0.226 (Best raw score= for Gene )
Specificity index: 0.07
External "T28F2.8" Links  Wormbase NCBI Phenobank 1
Cenix:39-e12 Phenotypes Help with Phenotypes
External Movies 
(Please note that RNAiDB is not
hosting these data.)
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Help
Cenix:39-e12 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:39-e12 (PCR_reagent)
Remark  early embryonic: No significant defects.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y41E3.2 Browse using GBrowse
Gene Graph
Gene Plot of EGAP7.1 Browse using GBrowse
Gene Graph
Gene Plot of C24F3.6 Browse using GBrowse
Gene Graph
Gene Plot of F57B1.4 Browse using GBrowse
Gene Graph
Gene Plot of T21B4.2 Browse using GBrowse
Gene Graph
Gene Plot of F38A3.2 Browse using GBrowse
Gene Graph
Gene Plot of C53B4.5 Browse using GBrowse
Gene Graph
Gene Plot of F57B1.3 Browse using GBrowse
Gene Graph
Gene Plot of C18H7.3 Browse using GBrowse
Gene Graph
Gene Plot of T28F2.8 Browse using GBrowse
Gene Graph