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RNAi Experiment: Cenix:44-b1 Ace View of Cenix:44-b1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R10D12.15
Description of "R10D12.15"  Associated GO Term : chitinase activity
KOG Annotation  Predicted chitinase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (V:13970629..13971352)
Transcript overlap: 540 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 477
Relative score: 0.919 (Best raw score= for Gene )
Specificity index: 0.431
Wormbase (BLAST) RNAi primary
External "R10D12.15" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  T26F2.1
Description of "T26F2.1"  Associated GO Term : chitinase activity
Evidence for Inhibition 
ePCR Status: Best_ePCR (V:13978242..13978965)
Transcript overlap: 540 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 519
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.469
Wormbase (BLAST) RNAi primary
External "T26F2.1" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  C08B6.4
Description of "C08B6.4"  Associated GO Term : chitinase activity
Evidence for Inhibition 
Sliding Window Raw score: 110
Relative score: 0.212 (Best raw score= for Gene )
Specificity index: 0.099
Wormbase (BLAST) RNAi secondary
External "C08B6.4" Links  Wormbase NCBI Phenobank 1 2
Cenix:44-b1 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:44-b1 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:44-b1 (PCR_reagent)
Remark  3/3 tests are wildtype.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of T26F2.1 Browse using GBrowse
Gene Graph
Gene Plot of C08B6.4 Browse using GBrowse
Gene Graph
Gene Plot of R10D12.15 Browse using GBrowse
Gene Graph