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RNAi Experiment: Cenix:49-c5 Ace View of Cenix:49-c5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F29G9.3 (aps-1)
Description of "F29G9.3"  The apt-2 gene encodes an adaptin: specifically, it encodes an ortholog of the sigma1 subunit of adaptor protein complex 1 (AP-1).
KOG Annotation  Clathrin adaptor complex, small subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:6020430..6022122)
Transcript overlap: 602 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 497
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F29G9.3" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F29G9.2
KOG Annotation  Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A)
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 37 nt Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "F29G9.2" Links  Wormbase NCBI Phenobank 1 2
Cenix:49-c5 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  WT_postembryonic_morphology
External Movies 
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hosting these data.)
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Cenix:49-c5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:49-c5 (PCR_reagent)
Remark  early embryonic: No significant defects seen in any of the recordings.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F29G9.3 Browse using GBrowse
Gene Graph
Gene Plot of F29G9.2 Browse using GBrowse
Gene Graph