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RNAi Experiment: Cenix:92-e2 Ace View of Cenix:92-e2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y77E11A.4 (jtr-1)
Description of "Y77E11A.4"  jtr-1 encodes a predicted transmembrane protein that is related to the conserved jumping translocation breakpoint (JTB) family of proteins (OMIM:604671, the human JTB gene is found fused to telomeric repeats in a case of jumping translocation leading to leukemia); as loss of jtr-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of JTR-1 in C. elegans development and/or behavior is not yet known.
KOG Annotation  Transmembrane protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:1420423..1421849)
Transcript overlap: 635 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 572
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y77E11A.4" Links  Wormbase NCBI Phenobank 1
Cenix:92-e2 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:92-e2 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:92-e2 (PCR_reagent)
Remark  3/3 tests are wt
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y77E11A.4 Browse using GBrowse
Gene Graph