RNAi Experiment: JA:B0222.7 |
Ace View of JA:B0222.7
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Genes Inhibited |
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Gene Inhibited |
B0222.7 (col-145) |
Description of "B0222.7" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (V:9164285..9165879)
Transcript overlap: 901 nt |
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Sliding Window |
Raw score: 838
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.225 |
Wormbase (BLAST) |
RNAi primary |
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External "B0222.7" Links |
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Gene Inhibited |
H06A10.2 (col-185) |
Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
Evidence for Inhibition |
Sliding Window |
Raw score: 204
Relative score: 0.243 (Best raw score= for Gene )
Specificity index: 0.055 |
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External "H06A10.2" Links |
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Gene Inhibited |
B0222.8 (col-10) |
Description of "B0222.8" |
col-10 encodes a collagen protein; expressed exclusively in hypodermal cells |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 374
Relative score: 0.446 (Best raw score= for Gene )
Specificity index: 0.101 |
Wormbase (BLAST) |
RNAi primary |
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External "B0222.8" Links |
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Gene Inhibited |
T13B5.4 (col-40) |
Description of "T13B5.4" |
col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 123
Relative score: 0.147 (Best raw score= for Gene )
Specificity index: 0.033 |
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External "T13B5.4" Links |
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Gene Inhibited |
EGAP7.1 (dpy-3) |
Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 315
Relative score: 0.376 (Best raw score= for Gene )
Specificity index: 0.085 |
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External "EGAP7.1" Links |
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Gene Inhibited |
F23H12.4 (sqt-3) |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 87
Relative score: 0.104 (Best raw score= for Gene )
Specificity index: 0.023 |
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External "F23H12.4" Links |
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Gene Inhibited |
F54D1.2 (col-126) |
Description of "F54D1.2" |
Associated GO Term : structural constituent of cuticle |
Evidence for Inhibition |
Sliding Window |
Raw score: 73
Specificity index: 0.02 |
Wormbase (BLAST) |
RNAi secondary |
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External "F54D1.2" Links |
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Gene Inhibited |
F54B11.2 (col-44) |
Description of "F54B11.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 280
Relative score: 0.334 (Best raw score= for Gene )
Specificity index: 0.075 |
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External "F54B11.2" Links |
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Gene Inhibited |
B0222.6 (col-144) |
Description of "B0222.6" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 400
Relative score: 0.477 (Best raw score= for Gene )
Specificity index: 0.108 |
Wormbase (BLAST) |
RNAi primary |
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External "B0222.6" Links |
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Gene Inhibited |
F54D1.3 (col-127) |
Description of "F54D1.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 73
Relative score: 0.087 (Best raw score= for Gene )
Specificity index: 0.02 |
Wormbase (BLAST) |
RNAi secondary |
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External "F54D1.3" Links |
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Gene Inhibited |
K04H4.1 (emb-9) |
Description of "K04H4.1" |
emb-9 encodes the alpha-1 chain of Type IV basement membrane collagen most closely equivalent to human COL4A1 (OMIM:120130) on the basis of biological function; EMB-9 forms heterotrimeric Type IV collagen with LET-2, the alpha-2-like chain, and is required for the assembly and/or secretion of LET-2; EMB-9 is essential for embryonic morphogenesis, particularly epidermal elongation, and for larval development; EMB-9 is expresed primarily by body wall muscles and some somatic cells of the gonad and is detected in nearly all basement membranes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 468
Relative score: 0.558 (Best raw score= for Gene )
Specificity index: 0.126 |
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External "K04H4.1" Links |
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Gene Inhibited |
C09G5.5 (col-80) |
Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 197
Relative score: 0.235 (Best raw score= for Gene )
Specificity index: 0.053 |
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External "C09G5.5" Links |
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Gene Inhibited |
M195.1 (col-77) |
Description of "M195.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 286
Relative score: 0.341 (Best raw score= for Gene )
Specificity index: 0.077 |
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External "M195.1" Links |
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JA:B0222.7 Phenotypes |
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Phenotype |
WT
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JA:B0222.7 Experiment Details |
Ace View |
Laboratory |
JA |
RNAi Reagent & Type |
sjj_B0222.7 (PCR_reagent) |
Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
Date |
2003-1-10 |
Gene Plot of H06A10.2 |
Browse using GBrowse
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Gene Plot of T13B5.4 |
Browse using GBrowse
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Gene Plot of B0222.8 |
Browse using GBrowse
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Gene Plot of EGAP7.1 |
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Gene Plot of B0222.7 |
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Gene Plot of F23H12.4 |
Browse using GBrowse
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Gene Plot of F54D1.2 |
Browse using GBrowse
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Gene Plot of B0222.6 |
Browse using GBrowse
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Gene Plot of F54B11.2 |
Browse using GBrowse
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Gene Plot of F54D1.3 |
Browse using GBrowse
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Gene Plot of K04H4.1 |
Browse using GBrowse
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Gene Plot of C09G5.5 |
Browse using GBrowse
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Gene Plot of M195.1 |
Browse using GBrowse
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