| RNAi Experiment: JA:B0222.8 |
Ace View of JA:B0222.8
|
| Genes Inhibited |
 |
| Gene Inhibited |
B0222.8 (col-10) |
| Description of "B0222.8" |
col-10 encodes a collagen protein; expressed exclusively in hypodermal cells |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (V:9166920..9168019)
Transcript overlap: 923 nt |
|
| Sliding Window |
Raw score: 860
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.193 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0222.8" Links |
  |
| Gene Inhibited |
T28C6.4 (col-117) |
| Description of "T28C6.4" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 199
Specificity index: 0.045 |
|
| External "T28C6.4" Links |
|
| Gene Inhibited |
H06A10.2 (col-185) |
| Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 202
Relative score: 0.235 (Best raw score= for Gene )
Specificity index: 0.045 |
|
| External "H06A10.2" Links |
|
| Gene Inhibited |
T06E4.6 (col-146) |
| Description of "T06E4.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 475
Relative score: 0.552 (Best raw score= for Gene )
Specificity index: 0.107 |
|
| External "T06E4.6" Links |
|
| Gene Inhibited |
T13B5.4 (col-40) |
| Description of "T13B5.4" |
col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 125
Relative score: 0.145 (Best raw score= for Gene )
Specificity index: 0.028 |
|
| External "T13B5.4" Links |
|
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 315
Relative score: 0.366 (Best raw score= for Gene )
Specificity index: 0.071 |
|
| External "EGAP7.1" Links |
|
| Gene Inhibited |
T28C6.6 (col-3) |
| Description of "T28C6.6" |
col-3 encodes a collagen protein that affects body morphogenesis, larval viability, and locomotion in large scale RNAi screens; mRNA is expressed during all developmental stages examined (in embryos, during the L2 to dauer molt, during the dauer to L4 larval molt, and during the L4 to adult molt). |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 199
Relative score: 0.231 (Best raw score= for Gene )
Specificity index: 0.045 |
|
| External "T28C6.6" Links |
|
| Gene Inhibited |
ZK863.2 (col-37) |
| Description of "ZK863.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 225
Relative score: 0.262 (Best raw score= for Gene )
Specificity index: 0.051 |
|
| External "ZK863.2" Links |
|
| Gene Inhibited |
F57B7.3 (col-156) |
| Description of "F57B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 223
Relative score: 0.259 (Best raw score= for Gene )
Specificity index: 0.05 |
|
| External "F57B7.3" Links |
|
| Gene Inhibited |
F23H12.4 (sqt-3) |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 128
Relative score: 0.149 (Best raw score= for Gene )
Specificity index: 0.029 |
|
| External "F23H12.4" Links |
|
| Gene Inhibited |
B0222.7 (col-145) |
| Description of "B0222.7" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 252
Relative score: 0.293 (Best raw score= for Gene )
Specificity index: 0.057 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0222.7" Links |
|
| Gene Inhibited |
F54B11.2 (col-44) |
| Description of "F54B11.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 306
Relative score: 0.356 (Best raw score= for Gene )
Specificity index: 0.069 |
|
| External "F54B11.2" Links |
|
| Gene Inhibited |
B0222.6 (col-144) |
| Description of "B0222.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 727
Relative score: 0.845 (Best raw score= for Gene )
Specificity index: 0.163 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0222.6" Links |
|
| Gene Inhibited |
C09G5.5 (col-80) |
| Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 213
Relative score: 0.248 (Best raw score= for Gene )
Specificity index: 0.048 |
|
| External "C09G5.5" Links |
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| JA:B0222.8 Phenotypes |
|
|
| Phenotype |
WT
|
| JA:B0222.8 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_B0222.8 (PCR_reagent) |
| Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
| Date |
2003-1-10 |
| Gene Plot of T28C6.4 |
Browse using GBrowse
|
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| Gene Plot of H06A10.2 |
Browse using GBrowse
|
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| Gene Plot of T13B5.4 |
Browse using GBrowse
|
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| Gene Plot of T06E4.6 |
Browse using GBrowse
|
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| Gene Plot of B0222.8 |
Browse using GBrowse
|
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| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
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| Gene Plot of T28C6.6 |
Browse using GBrowse
|
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| Gene Plot of ZK863.2 |
Browse using GBrowse
|
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| Gene Plot of B0222.7 |
Browse using GBrowse
|
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| Gene Plot of F23H12.4 |
Browse using GBrowse
|
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| Gene Plot of F57B7.3 |
Browse using GBrowse
|
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| Gene Plot of B0222.6 |
Browse using GBrowse
|
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| Gene Plot of F54B11.2 |
Browse using GBrowse
|
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| Gene Plot of C09G5.5 |
Browse using GBrowse
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