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RNAi Experiment: JA:C05D11.6 Ace View of JA:C05D11.6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C05D11.6 (nas-4)
Description of "C05D11.6"  nas-4 encodes a predicted extracellular matrix metalloprotease of the M12A (astacin) family that contains an N-terminal signal sequence and a catalytic domain, but no recognizable regulatory domains in the C-terminus; as loss of nas-4 activity via RNAi results in no obvious abnormalities, the precise role of NAS-4 in C. elegans development and/or behavior is not yet known; however, an NAS-4 translational reporter is expressed in the pharynx and intestine in larvae and adults, suggesting a role for NAS-4 in digestion; NAS-4 is specifically detected within cells of the pharyngeal procorpus, metacorpus, isthmus, and terminal bulb, with extracellular expression detected in the lumen of the terminal bulb and in the gut.
KOG Annotation  Meprin A metalloprotease
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:6412579..6414224)
Transcript overlap: 970 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 844
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C05D11.6" Links  Wormbase NCBI
JA:C05D11.6 Phenotypes Help with Phenotypes
Phenotype  WT
JA:C05D11.6 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C05D11.6 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of C05D11.6 Browse using GBrowse
Gene Graph