Link to C06A5.5Link to C06A5.10RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F44F4.2.2Link to Y76G2A.1Link to F44F4.2.1Link to F14D2.9geneMap Link to Y76G2A.2Link to Y76G2A.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C06A5.5Link to F14D2.9Link to F44F4.2.2Link to F44F4.2.1geneMap Link to Y48G1BL.1Link to Y48G1BL.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F14D2.9RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C06A5.4Link to F44F4.2.1Link to F44F4.2.2Link to C06A5.5Link to Y76G2A.1geneMap
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RNAi Experiment: JA:C06A5.5 Ace View of JA:C06A5.5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C06A5.5
KOG Annotation  Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:5981853..5982459)
Transcript overlap: 379 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 316
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.41
External "C06A5.5" Links  Wormbase NCBI
Gene Inhibited  Y76G2A.1
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:5979497..5980103)
Transcript overlap: 379 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 274
Relative score: 0.867 (Best raw score= for Gene )
Specificity index: 0.355
Wormbase (BLAST) RNAi primary
External "Y76G2A.1" Links  Wormbase NCBI
Gene Inhibited  Y48G1BL.4
KOG Annotation  Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 70
Relative score: 0.222 (Best raw score= for Gene )
Specificity index: 0.091
External "Y48G1BL.4" Links  Wormbase NCBI
Gene Inhibited  F14D2.9
KOG Annotation  Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
Predicted transposase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 111
Relative score: 0.351 (Best raw score= for Gene )
Specificity index: 0.144
External "F14D2.9" Links  Wormbase NCBI
JA:C06A5.5 Phenotypes Help with Phenotypes
Phenotype  WT
JA:C06A5.5 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C06A5.5 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of Y48G1BL.4 Browse using GBrowse
Gene Graph
Gene Plot of F14D2.9 Browse using GBrowse
Gene Graph
Gene Plot of Y76G2A.1 Browse using GBrowse
Gene Graph
Gene Plot of C06A5.5 Browse using GBrowse
Gene Graph