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RNAi Experiment: JA:C06H5.2 Ace View of JA:C06H5.2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C06H5.2
Description of "C06H5.2"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:17902075..17904342)
Transcript overlap: 1081 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1010
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.432
Wormbase (BLAST) RNAi primary
External "C06H5.2" Links  Wormbase NCBI
Gene Inhibited  C06H5.1
Description of "C06H5.1"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Evidence for Inhibition 
Sliding Window Raw score: 840
Relative score: 0.832 (Best raw score= for Gene )
Specificity index: 0.359
Wormbase (BLAST) RNAi primary
External "C06H5.1" Links  Wormbase NCBI
Gene Inhibited  ZC239.6
Description of "ZC239.6"  Associated GO Term : protein binding
KOG Annotation  Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 395
Relative score: 0.391 (Best raw score= for Gene )
Specificity index: 0.169
External "ZC239.6" Links  Wormbase NCBI
Gene Inhibited  T05H4.2
Description of "T05H4.2"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
Evidence for Inhibition 
Sliding Window Raw score: 92
Relative score: 0.091 (Best raw score= for Gene )
Specificity index: 0.039
Wormbase (BLAST) RNAi secondary
External "T05H4.2" Links  Wormbase NCBI
JA:C06H5.2 Phenotypes Help with Phenotypes
Phenotype  WT
JA:C06H5.2 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C06H5.2 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of C06H5.2 Browse using GBrowse
Gene Graph
Gene Plot of ZC239.6 Browse using GBrowse
Gene Graph
Gene Plot of C06H5.1 Browse using GBrowse
Gene Graph
Gene Plot of T05H4.2 Browse using GBrowse
Gene Graph