Link to C07D8.3Link to C07D8.2RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F07B7.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to K06C4.15geneMap Link to K06C4.15Link to K06C4.14RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F07B7.6geneMap Link to K09E3.1RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F07B7.6Link to C40A11.9geneMap Link to C40A11.1Link to C40A11.9RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: JA:C07D8.2 Ace View of JA:C07D8.2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C07D8.2
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (X:7362234..7363380)
Transcript overlap: 579 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 537
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.364
Wormbase (BLAST) RNAi primary
External "C07D8.2" Links  Wormbase NCBI
Gene Inhibited  F07B7.6
Description of "F07B7.6"  Associated GO Term : aspartic-type endopeptidase activity
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 290
Relative score: 0.54 (Best raw score= for Gene )
Specificity index: 0.196
Wormbase (BLAST) RNAi secondary
External "F07B7.6" Links  Wormbase NCBI
Gene Inhibited  K06C4.15
Description of "K06C4.15"  Associated GO Term : aspartic-type endopeptidase activity
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 231
Relative score: 0.43 (Best raw score= for Gene )
Specificity index: 0.157
Wormbase (BLAST) RNAi secondary
External "K06C4.15" Links  Wormbase NCBI
Gene Inhibited  K09E3.1
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 310
Relative score: 0.577 (Best raw score= for Gene )
Specificity index: 0.21
Wormbase (BLAST) RNAi primary
External "K09E3.1" Links  Wormbase NCBI
Gene Inhibited  C40A11.9
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 108
Relative score: 0.201 (Best raw score= for Gene )
Specificity index: 0.073
Wormbase (BLAST) RNAi primary
External "C40A11.9" Links  Wormbase NCBI
JA:C07D8.2 Phenotypes Help with Phenotypes
Phenotype  WT
JA:C07D8.2 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C07D8.2 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of F07B7.6 Browse using GBrowse
Gene Graph
Gene Plot of C07D8.2 Browse using GBrowse
Gene Graph
Gene Plot of K06C4.15 Browse using GBrowse
Gene Graph
Gene Plot of K09E3.1 Browse using GBrowse
Gene Graph
Gene Plot of C40A11.9 Browse using GBrowse
Gene Graph