| RNAi Experiment: JA:C09G5.4 |
Ace View of JA:C09G5.4
|
| Genes Inhibited |
 |
| Gene Inhibited |
C09G5.4 (col-39) |
| Description of "C09G5.4" |
col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (II:10705099..10706296)
Transcript overlap: 825 nt |
|
| Sliding Window |
Raw score: 783
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.296 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "C09G5.4" Links |
  |
| Gene Inhibited |
ZK1193.1 (col-19) |
| Description of "ZK1193.1" |
col-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 379
Relative score: 0.484 (Best raw score= for Gene )
Specificity index: 0.144 |
|
| External "ZK1193.1" Links |
|
| Gene Inhibited |
W01B6.7 (col-2) |
| Description of "W01B6.7" |
col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 66
Relative score: 0.084 (Best raw score= for Gene )
Specificity index: 0.025 |
|
| External "W01B6.7" Links |
|
| Gene Inhibited |
T11B7.3 (col-118) |
| Description of "T11B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 101
Relative score: 0.129 (Best raw score= for Gene )
Specificity index: 0.038 |
|
| External "T11B7.3" Links |
|
| Gene Inhibited |
Y2H9A.3 (col-162) |
| Description of "Y2H9A.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 61
Relative score: 0.078 (Best raw score= for Gene )
Specificity index: 0.023 |
|
| External "Y2H9A.3" Links |
|
| Gene Inhibited |
F57B7.3 (col-156) |
| Description of "F57B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 302
Specificity index: 0.114 |
|
| External "F57B7.3" Links |
|
| Gene Inhibited |
T21B4.2 (col-85) |
| Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 319
Relative score: 0.407 (Best raw score= for Gene )
Specificity index: 0.121 |
|
| External "T21B4.2" Links |
|
| Gene Inhibited |
F38A3.2 (ram-2) |
| Description of "F38A3.2" |
ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 302
Relative score: 0.386 (Best raw score= for Gene )
Specificity index: 0.114 |
|
| External "F38A3.2" Links |
|
| Gene Inhibited |
H27M09.4 (dpy-14) |
| Description of "H27M09.4" |
dpy-14 encodes a type III (alpha 1) collagen that is required for embryonic, larval, and vulval development, proper amphid morphology, and regulation of body shape and size; a dpy-14 promoter-GFP fusion construct is reportedly expressed in embryonic neurons. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 328
Relative score: 0.419 (Best raw score= for Gene )
Specificity index: 0.124 |
|
| External "H27M09.4" Links |
|
| JA:C09G5.4 Phenotypes |
|
|
| Phenotype |
WT
|
| JA:C09G5.4 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_C09G5.4 (PCR_reagent) |
| Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
| Date |
2003-1-10 |
| Gene Plot of ZK1193.1 |
Browse using GBrowse
|
 |
| Gene Plot of W01B6.7 |
Browse using GBrowse
|
 |
| Gene Plot of T11B7.3 |
Browse using GBrowse
|
 |
| Gene Plot of Y2H9A.3 |
Browse using GBrowse
|
 |
| Gene Plot of F57B7.3 |
Browse using GBrowse
|
 |
| Gene Plot of T21B4.2 |
Browse using GBrowse
|
 |
| Gene Plot of F38A3.2 |
Browse using GBrowse
|
 |
| Gene Plot of H27M09.4 |
Browse using GBrowse
|
 |
| Gene Plot of C09G5.4 |
Browse using GBrowse
|
 |
![Adult](JavaScript:void
window.open("/cgi-bin/rnaidb/popUpImage.cgi?imgName=N2wormfinal.png",
"RNAiDB Help","toolbar=no, location=no, directories=no,
status=no, menubar=no, scrollbars=yes, resizable=no,
copyhistory=no, width=1000, height=550"))
