Link to C16C2.1Link to C16C2.3RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C16C2.4Link to C16C2.3Link to C16C2.2a.1Link to C16C2.2a.2Link to C16C2.2bLink to C16C2.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to AC8.5RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y48E1B.7geneMap
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RNAi Experiment: JA:C16C2.1 Ace View of JA:C16C2.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C16C2.1 (ceh-5)
Description of "C16C2.1"  ceh-5 encodes a homeodomain protein, similar to the human VENTRAL ANTERIOR HOMEO BOX 2 gene (VAX2; OMIM:604295); CEH-5 is dispensable for viability and gross morphology.
KOG Annotation  Transcription factor EMX1 and related HOX domain proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:9727149..9729074)
Transcript overlap: 447 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 363
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.854
Wormbase (BLAST) RNAi primary
External "C16C2.1" Links  Wormbase NCBI
Gene Inhibited  C16C2.3 (ocrl-1)
Description of "C16C2.3"  The C16C2.3 gene encodes an inositol-1,4,5-triphosphate 5-phosphatase homolog that is homologous to human OCRL.
KOG Annotation  Inositol polyphosphate 5-phosphatase and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:9727149..9729074)
Transcript overlap: 107 nt
Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "C16C2.3" Links  Wormbase NCBI
Gene Inhibited  AC8.5
Evidence for Inhibition 
Sliding Window Raw score: 62
Relative score: 0.171 (Best raw score= for Gene )
Specificity index: 0.146
External "AC8.5" Links  Wormbase NCBI
JA:C16C2.1 Phenotypes Help with Phenotypes
Phenotype  WT
JA:C16C2.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C16C2.1 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of C16C2.1 Browse using GBrowse
Gene Graph
Gene Plot of AC8.5 Browse using GBrowse
Gene Graph
Gene Plot of C16C2.3 Browse using GBrowse
Gene Graph