Link to C25A1.5Link to C25A1.6Link to C25A1.7.1Link to C25A1.7.3Link to C25A1.7.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C25A1.5Link to C25A1.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C25A1.6Link to C25A1.7.3Link to C25A1.7.1Link to C25A1.7.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: JA:C25A1.6 Ace View of JA:C25A1.6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C25A1.6
KOG Annotation  H/ACA snoRNP complex, subunit NOP10
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:10178646..10179829)
Transcript overlap: 615 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 552
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.697
Wormbase (BLAST) RNAi primary
External "C25A1.6" Links  Wormbase NCBI
Gene Inhibited  C25A1.5
Description of "C25A1.5"  Associated GO Term : catalytic activity
KOG Annotation  Cytochrome b5
Sphingolipid fatty acid hydroxylase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:10178646..10179829)
Transcript overlap: 261 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 240
Relative score: 0.435 (Best raw score= for Gene )
Specificity index: 0.303
External "C25A1.5" Links  Wormbase NCBI
Gene Inhibited  C25A1.7 (irs-2)
Description of "C25A1.7"  irs-2 encodes a predicted mitochondrial isoleucyl-tRNA synthetase (IleRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of isoleucine to its cognate tRNA and is thus required for protein biosynthesis; loss of irs-2 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, suggesting possible functional redundancy with irs-1.
KOG Annotation  Isoleucyl-tRNA synthetase
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 3 nt Explain types of evidence for RNAi inhibition
External "C25A1.7" Links  Wormbase NCBI
JA:C25A1.6 Phenotypes Help with Phenotypes
Larval  Gro
Adult  Clr
JA:C25A1.6 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C25A1.6 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of C25A1.7 Browse using GBrowse
Gene Graph
Gene Plot of C25A1.6 Browse using GBrowse
Gene Graph
Gene Plot of C25A1.5 Browse using GBrowse
Gene Graph