Link to C27A12.5RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
RNAi Experiment: JA:C27A12.5 Ace View of JA:C27A12.5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C27A12.5 (ceh-2)
Description of "C27A12.5"  ceh-2 encodes a homeodomain protein homologous to Drosophila empty spiracles (EMS) and the vertebrate EMX1 and EMX2 proteins (OMIM:600034, 600035); although the exact biological role of CEH-2 in C. elegans development and/or behavior is not yet known, expression in pharyngeal neurons and muscle, as well as vulval cells (vulB1, vulB2, and vulC) at late stages of development suggests that CEH-2 may play a role in terminal differentiation events in diverse cell types.
KOG Annotation  Transcription factor EMX1 and related HOX domain proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:6049152..6050709)
Transcript overlap: 557 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 515
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C27A12.5" Links  Wormbase NCBI
JA:C27A12.5 Phenotypes Help with Phenotypes
Phenotype  WT
JA:C27A12.5 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C27A12.5 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of C27A12.5 Browse using GBrowse
Gene Graph