Link to C40A11.1Link to C40A11.9RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C56G3.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to B0047.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y57A10A.30b.2Link to Y57A10A.30aLink to Y57A10A.30b.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to W09B7.1Link to F07B7.1Link to F53A2.6.1Link to F53A2.6.3Link to F53A2.6.2geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:C40A11.1 Ace View of JA:C40A11.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C40A11.1
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:2154198..2155347)
Transcript overlap: 834 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 729
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.763
Wormbase (BLAST) RNAi primary
External "C40A11.1" Links  Wormbase NCBI
Gene Inhibited  C56G3.2
Description of "C56G3.2"  Associated GO Term : oxidoreductase activity
KOG Annotation  Aldo/keto reductase family proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 70
Specificity index: 0.073
Wormbase (BLAST) RNAi primary
External "C56G3.2" Links  Wormbase NCBI
Gene Inhibited  B0047.4
Evidence for Inhibition 
Sliding Window Raw score: 70
Relative score: 0.096 (Best raw score= for Gene )
Specificity index: 0.073
External "B0047.4" Links  Wormbase NCBI
Gene Inhibited  Y57A10A.30 (ife-5)
Description of "Y57A10A.30"  ife-5 encodes a member of the Initiation Factor 4E (eIF4E) family; it is expressed in the germ line.
KOG Annotation  Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 87
Relative score: 0.119 (Best raw score= for Gene )
Specificity index: 0.091
External "Y57A10A.30" Links  Wormbase NCBI
JA:C40A11.1 Phenotypes Help with Phenotypes
Phenotype  WT
JA:C40A11.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C40A11.1 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of C40A11.1 Browse using GBrowse
Gene Graph
Gene Plot of C56G3.2 Browse using GBrowse
Gene Graph
Gene Plot of B0047.4 Browse using GBrowse
Gene Graph
Gene Plot of Y57A10A.30 Browse using GBrowse
Gene Graph