Link to Y56A3A.32.2Link to Y56A3A.32.1Link to Y56A3A.33RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y56A3A.31Link to Y56A3A.32.1Link to Y56A3A.32.2Link to Y56A3A.33RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y75B8A.1RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:C51G7.j Ace View of JA:C51G7.j
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y56A3A.33
Description of "Y56A3A.33"  Associated GO Term : exonuclease activity
KOG Annotation  3'-5' exonuclease
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:11999269..12001115)
Transcript overlap: 833 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 666
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.629
Wormbase (BLAST) RNAi primary
External "Y56A3A.33" Links  Wormbase NCBI
Gene Inhibited  Y56A3A.32 (wah-1)
Description of "Y56A3A.32"  Associated GO Term : disulfide oxidoreductase activity
KOG Annotation  Programmed cell death 8 (apoptosis-inducing factor)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:11999269..12001115)
Transcript overlap: 200 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 179
Relative score: 0.269 (Best raw score= for Gene )
Specificity index: 0.169
Wormbase (BLAST) RNAi primary
External "Y56A3A.32" Links  Wormbase NCBI
Gene Inhibited  Y75B8A.1 (php-3)
Description of "Y75B8A.1"  Associated GO Term : DNA binding
KOG Annotation  Transcription factor Abd-B, contains HOX domain
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 71
Relative score: 0.107 (Best raw score= for Gene )
Specificity index: 0.067
External "Y75B8A.1" Links  Wormbase NCBI
Gene Inhibited  F47H4.3 (srz-46)
Evidence for Inhibition 
Sliding Window Raw score: 143
Relative score: 0.215 (Best raw score= for Gene )
Specificity index: 0.135
External "F47H4.3" Links  Wormbase NCBI
JA:C51G7.j Phenotypes Help with Phenotypes
Phenotype  WT
JA:C51G7.j Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C51G7.j (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y56A3A.32 Browse using GBrowse
Gene Graph
Gene Plot of Y75B8A.1 Browse using GBrowse
Gene Graph
Gene Plot of F47H4.3 Browse using GBrowse
Gene Graph
Gene Plot of Y56A3A.33 Browse using GBrowse
Gene Graph