Link to C53B4.4cLink to C53B4.4aLink to C53B4.4dLink to C53B4.4bLink to C53B4.5RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:C53B4.5 Ace View of JA:C53B4.5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C53B4.5 (col-119)
Description of "C53B4.5"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:8978760..8979709)
Transcript overlap: 907 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 865
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.448
Wormbase (BLAST) RNAi primary
External "C53B4.5" Links  Wormbase NCBI
Gene Inhibited  Y69H2.14
Description of "Y69H2.14"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 205
Relative score: 0.237 (Best raw score= for Gene )
Specificity index: 0.106
External "Y69H2.14" Links  Wormbase NCBI
Gene Inhibited  C29E4.1 (col-90)
Description of "C29E4.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 139
Relative score: 0.161 (Best raw score= for Gene )
Specificity index: 0.072
External "C29E4.1" Links  Wormbase NCBI
Gene Inhibited  EGAP7.1 (dpy-3)
Description of "EGAP7.1"  dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 76
Relative score: 0.088 (Best raw score= for Gene )
Specificity index: 0.039
External "EGAP7.1" Links  Wormbase NCBI
Gene Inhibited  ZC513.8 (col-43)
Description of "ZC513.8"  col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 71
Relative score: 0.082 (Best raw score= for Gene )
Specificity index: 0.037
External "ZC513.8" Links  Wormbase NCBI
Gene Inhibited  C24F3.6 (col-124)
Description of "C24F3.6"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 91
Relative score: 0.105 (Best raw score= for Gene )
Specificity index: 0.047
Wormbase (BLAST) RNAi secondary
External "C24F3.6" Links  Wormbase NCBI
Gene Inhibited  F57B1.4 (col-160)
Description of "F57B1.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 109
Relative score: 0.126 (Best raw score= for Gene )
Specificity index: 0.056
External "F57B1.4" Links  Wormbase NCBI
Gene Inhibited  F57B1.3 (col-159)
Description of "F57B1.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 88
Relative score: 0.102 (Best raw score= for Gene )
Specificity index: 0.046
External "F57B1.3" Links  Wormbase NCBI
Gene Inhibited  T28F2.8 (col-51)
Description of "T28F2.8"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 142
Relative score: 0.164 (Best raw score= for Gene )
Specificity index: 0.073
External "T28F2.8" Links  Wormbase NCBI
Gene Inhibited  C01B12.1 (sqt-2)
Description of "C01B12.1"  Uncloned locus that affects alae formation and body morphology such that mutants exhibit a slightly dumpy phenotype and the bodies of mutants are helically twisted.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 146
Relative score: 0.169 (Best raw score= for Gene )
Specificity index: 0.076
External "C01B12.1" Links  Wormbase NCBI
JA:C53B4.5 Phenotypes Help with Phenotypes
Phenotype  WT
JA:C53B4.5 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C53B4.5 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y69H2.14 Browse using GBrowse
Gene Graph
Gene Plot of C29E4.1 Browse using GBrowse
Gene Graph
Gene Plot of C24F3.6 Browse using GBrowse
Gene Graph
Gene Plot of ZC513.8 Browse using GBrowse
Gene Graph
Gene Plot of EGAP7.1 Browse using GBrowse
Gene Graph
Gene Plot of F57B1.4 Browse using GBrowse
Gene Graph
Gene Plot of C53B4.5 Browse using GBrowse
Gene Graph
Gene Plot of F57B1.3 Browse using GBrowse
Gene Graph
Gene Plot of C01B12.1 Browse using GBrowse
Gene Graph
Gene Plot of T28F2.8 Browse using GBrowse
Gene Graph