| RNAi Experiment: JA:C53B4.5 |
Ace View of JA:C53B4.5
|
| Genes Inhibited |
 |
| Gene Inhibited |
C53B4.5 (col-119) |
| Description of "C53B4.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (IV:8978760..8979709)
Transcript overlap: 907 nt |
|
| Sliding Window |
Raw score: 865
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.448 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "C53B4.5" Links |
  |
| Gene Inhibited |
Y69H2.14 |
| Description of "Y69H2.14" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 205
Relative score: 0.237 (Best raw score= for Gene )
Specificity index: 0.106 |
|
| External "Y69H2.14" Links |
|
| Gene Inhibited |
C29E4.1 (col-90) |
| Description of "C29E4.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 139
Relative score: 0.161 (Best raw score= for Gene )
Specificity index: 0.072 |
|
| External "C29E4.1" Links |
|
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 76
Relative score: 0.088 (Best raw score= for Gene )
Specificity index: 0.039 |
|
| External "EGAP7.1" Links |
|
| Gene Inhibited |
ZC513.8 (col-43) |
| Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 71
Relative score: 0.082 (Best raw score= for Gene )
Specificity index: 0.037 |
|
| External "ZC513.8" Links |
|
| Gene Inhibited |
C24F3.6 (col-124) |
| Description of "C24F3.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 91
Relative score: 0.105 (Best raw score= for Gene )
Specificity index: 0.047 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "C24F3.6" Links |
|
| Gene Inhibited |
F57B1.4 (col-160) |
| Description of "F57B1.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 109
Relative score: 0.126 (Best raw score= for Gene )
Specificity index: 0.056 |
|
| External "F57B1.4" Links |
|
| Gene Inhibited |
F57B1.3 (col-159) |
| Description of "F57B1.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 88
Relative score: 0.102 (Best raw score= for Gene )
Specificity index: 0.046 |
|
| External "F57B1.3" Links |
|
| Gene Inhibited |
T28F2.8 (col-51) |
| Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 142
Relative score: 0.164 (Best raw score= for Gene )
Specificity index: 0.073 |
|
| External "T28F2.8" Links |
|
| Gene Inhibited |
C01B12.1 (sqt-2) |
| Description of "C01B12.1" |
Uncloned locus that affects alae formation and body morphology such that mutants exhibit a slightly dumpy phenotype and the bodies of mutants are helically twisted. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 146
Relative score: 0.169 (Best raw score= for Gene )
Specificity index: 0.076 |
|
| External "C01B12.1" Links |
|
| JA:C53B4.5 Phenotypes |
|
|
| Phenotype |
WT
|
| JA:C53B4.5 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_C53B4.5 (PCR_reagent) |
| Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
| Date |
2003-1-10 |
| Gene Plot of Y69H2.14 |
Browse using GBrowse
|
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| Gene Plot of C29E4.1 |
Browse using GBrowse
|
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| Gene Plot of C24F3.6 |
Browse using GBrowse
|
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| Gene Plot of ZC513.8 |
Browse using GBrowse
|
 |
| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
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| Gene Plot of F57B1.4 |
Browse using GBrowse
|
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| Gene Plot of C53B4.5 |
Browse using GBrowse
|
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| Gene Plot of F57B1.3 |
Browse using GBrowse
|
 |
| Gene Plot of C01B12.1 |
Browse using GBrowse
|
 |
| Gene Plot of T28F2.8 |
Browse using GBrowse
|
 |
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