Link to C55B7.2.2Link to C55B7.2.1RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C55B7.10Link to C55B7.2.2RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to T09B4.7geneMap Link to T09B4.7RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C55B7.10Link to F10G8.2geneMap Link to F10G8.2RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to T09B4.7geneMap
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RNAi Experiment: JA:C55B7.10 Ace View of JA:C55B7.10
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C55B7.2 (gly-2)
Description of "C55B7.2"  gly-2 encodes a functional homolog of mammalian UDP-N-acetylglucosamine alpha-6-d-mannoside beta-1,6-N-acetylglucosaminyltransferase V (GlcNAc-TV) which regulates polylactosamine-containing N-glycans; gly-2 is functionally interchangeable with the mammalian gene; GLY-2 is expressed in late embryos and in a subset of neurons in larvae, spermathecal and pharyngeal-intestinal valves and in specific vulval cells of adults.
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (I:6502302..6503879)
Transcript overlap: 361 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 263
Relative score: 0.384 (Best raw score= for Gene )
Specificity index: 0.185
External "C55B7.2" Links  Wormbase NCBI
Gene Inhibited  C55B7.10
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:6502302..6503879)
Transcript overlap: 384 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 342
Relative score: 0.499 (Best raw score= for Gene )
Specificity index: 0.241
Wormbase (BLAST) RNAi primary
External "C55B7.10" Links  Wormbase NCBI
Gene Inhibited  T09B4.7
Description of "T09B4.7"  Associated GO Term : protein kinase activity
KOG Annotation  Casein kinase (serine/threonine/tyrosine protein kinase)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 685
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.482
Wormbase (BLAST) RNAi primary
External "T09B4.7" Links  Wormbase NCBI
Gene Inhibited  F10G8.2
Evidence for Inhibition 
Sliding Window Raw score: 131
Relative score: 0.191 (Best raw score= for Gene )
Specificity index: 0.092
Wormbase (BLAST) RNAi secondary
External "F10G8.2" Links  Wormbase NCBI
JA:C55B7.10 Phenotypes Help with Phenotypes
Phenotype  WT
JA:C55B7.10 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_C55B7.10 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of T09B4.7 Browse using GBrowse
Gene Graph
Gene Plot of F10G8.2 Browse using GBrowse
Gene Graph
Gene Plot of C55B7.10 Browse using GBrowse
Gene Graph
Gene Plot of C55B7.2 Browse using GBrowse
Gene Graph