Link to F02E9.1RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F02E9.1Link to F02E9.2aLink to F02E9.2bRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: JA:F02E9.1 Ace View of JA:F02E9.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F02E9.1
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:8406782..8407714)
Transcript overlap: 465 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 360
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.841
Wormbase (BLAST) RNAi primary
External "F02E9.1" Links  Wormbase NCBI
Gene Inhibited  F02E9.2 (lin-28)
Description of "F02E9.2"  lin-28 encodes a cytoplasmic protein with a cold shock domain and retroviral-type (CCHC) zinc finger motifs; LIN-28 is required for events specific to the second larval stage, which in lin-28 mutants are skipped, and is itself subject both to negative regulation (by binding of the lin-4 stRNA to an element in the lin-28 3' UTR) and to positive regulation (by LIN-14, which negatively regulates lin-4-independent inhibition also acting on the lin-28 3' UTR).
KOG Annotation  Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:8406782..8407714)
Transcript overlap: 89 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 68
Relative score: 0.189 (Best raw score= for Gene )
Specificity index: 0.159
External "F02E9.2" Links  Wormbase NCBI
JA:F02E9.1 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F02E9.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F02E9.1 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of F02E9.1 Browse using GBrowse
Gene Graph
Gene Plot of F02E9.2 Browse using GBrowse
Gene Graph