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RNAi Experiment: JA:F02E9.4 Ace View of JA:F02E9.4
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F02E9.4 (pqn-28)
Description of "F02E9.4"  pqn-28 encodes an ortholog of the SIN3 family of histone deacetylase subunits, which also has a glutamine/asparagine-rich domain, possibly involved in epigenetic regulation; pqn-28 has no obvious phenotype in mass RNAi screens; on the basis of its homology, PQN-28, when activated by promoter-specific transcription factors, is expected to work in conjunction with other histone deacetylase components to induce chromatin silencing; PQN-28 may also silence genes by colocating to them with the O-GlcNAc transferase homolog OGT-1.
KOG Annotation  Histone deacetylase complex, SIN3 component
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:8421102..8422290)
Transcript overlap: 791 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 686
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F02E9.4" Links  Wormbase NCBI
JA:F02E9.4 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F02E9.4 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F02E9.4 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of F02E9.4 Browse using GBrowse
Gene Graph