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RNAi Experiment: JA:F07A5.3 Ace View of JA:F07A5.3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F07A5.3
Description of "F07A5.3"  Associated GO Term : cell adhesion
KOG Annotation  Plasma membrane glycoprotein CD36 and related membrane receptors
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:7355643..7357284)
Transcript overlap: 991 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 844
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F07A5.3" Links  Wormbase NCBI
Gene Inhibited  F43G9.9 (cpn-1)
Description of "F43G9.9"  cpn-1 encodes a calponin homolog, more closely related to calponin per se than to its paralogs transgelin (SM22 alpha) or neuronal protein NP25, that is is dispensable for viability and gross morphology in mass RNAi screens, and that has no obvious mutant phenotype in a rearrangement that probably disrupts cpn-1.
KOG Annotation  Calponin
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 59
External "F43G9.9" Links  Wormbase NCBI
JA:F07A5.3 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F07A5.3 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F07A5.3 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of F43G9.9 Browse using GBrowse
Gene Graph
Gene Plot of F07A5.3 Browse using GBrowse
Gene Graph