| RNAi Experiment: JA:F08G5.4 |
Ace View of JA:F08G5.4
|
| Genes Inhibited |
 |
| Gene Inhibited |
F08G5.4 (col-130) |
| Description of "F08G5.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (IV:12427594..12428707)
Transcript overlap: 841 nt |
|
| Sliding Window |
Raw score: 778
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.244 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F08G5.4" Links |
  |
| Gene Inhibited |
T11F9.9 (col-157) |
| Description of "T11F9.9" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 137
Relative score: 0.176 (Best raw score= for Gene )
Specificity index: 0.043 |
|
| External "T11F9.9" Links |
|
| Gene Inhibited |
B0222.8 (col-10) |
| Description of "B0222.8" |
col-10 encodes a collagen protein; expressed exclusively in hypodermal cells |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 63
Specificity index: 0.02 |
|
| External "B0222.8" Links |
|
| Gene Inhibited |
T06E4.6 (col-146) |
| Description of "T06E4.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 385
Specificity index: 0.121 |
|
| External "T06E4.6" Links |
|
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 375
Relative score: 0.482 (Best raw score= for Gene )
Specificity index: 0.117 |
|
| External "EGAP7.1" Links |
|
| Gene Inhibited |
F14F7.1 (col-98) |
| Description of "F14F7.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 241
Relative score: 0.31 (Best raw score= for Gene )
Specificity index: 0.075 |
|
| External "F14F7.1" Links |
|
| Gene Inhibited |
T07H6.3 (col-166) |
| Description of "T07H6.3" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 98
Relative score: 0.126 (Best raw score= for Gene )
Specificity index: 0.031 |
|
| External "T07H6.3" Links |
|
| Gene Inhibited |
F57B7.3 (col-156) |
| Description of "F57B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 101
Relative score: 0.13 (Best raw score= for Gene )
Specificity index: 0.032 |
|
| External "F57B7.3" Links |
|
| Gene Inhibited |
T06E4.4 (col-147) |
| Description of "T06E4.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 385
Relative score: 0.495 (Best raw score= for Gene )
Specificity index: 0.121 |
|
| External "T06E4.4" Links |
|
| Gene Inhibited |
T21B4.2 (col-85) |
| Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 129
Relative score: 0.166 (Best raw score= for Gene )
Specificity index: 0.04 |
|
| External "T21B4.2" Links |
|
| Gene Inhibited |
F38A3.2 (ram-2) |
| Description of "F38A3.2" |
ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 185
Relative score: 0.238 (Best raw score= for Gene )
Specificity index: 0.058 |
|
| External "F38A3.2" Links |
|
| Gene Inhibited |
B0222.6 (col-144) |
| Description of "B0222.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 63
Relative score: 0.081 (Best raw score= for Gene )
Specificity index: 0.02 |
|
| External "B0222.6" Links |
|
| Gene Inhibited |
Y51H4A.9 (col-137) |
| Description of "Y51H4A.9" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 110
Relative score: 0.141 (Best raw score= for Gene )
Specificity index: 0.034 |
|
| External "Y51H4A.9" Links |
|
| Gene Inhibited |
C09G5.5 (col-80) |
| Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 144
Relative score: 0.185 (Best raw score= for Gene )
Specificity index: 0.045 |
|
| External "C09G5.5" Links |
|
| JA:F08G5.4 Phenotypes |
|
|
| Phenotype |
WT
|
| JA:F08G5.4 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_F08G5.4 (PCR_reagent) |
| Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
| Date |
2003-1-10 |
| Gene Plot of T11F9.9 |
Browse using GBrowse
|
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| Gene Plot of T06E4.6 |
Browse using GBrowse
|
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| Gene Plot of B0222.8 |
Browse using GBrowse
|
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| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
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| Gene Plot of F08G5.4 |
Browse using GBrowse
|
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| Gene Plot of F14F7.1 |
Browse using GBrowse
|
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| Gene Plot of T06E4.4 |
Browse using GBrowse
|
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| Gene Plot of T07H6.3 |
Browse using GBrowse
|
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| Gene Plot of F57B7.3 |
Browse using GBrowse
|
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| Gene Plot of F38A3.2 |
Browse using GBrowse
|
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| Gene Plot of T21B4.2 |
Browse using GBrowse
|
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| Gene Plot of Y51H4A.9 |
Browse using GBrowse
|
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| Gene Plot of B0222.6 |
Browse using GBrowse
|
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| Gene Plot of C09G5.5 |
Browse using GBrowse
|
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