RNAi Experiment: JA:F08G5.4 |
Ace View of JA:F08G5.4
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Genes Inhibited |
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Gene Inhibited |
F08G5.4 (col-130) |
Description of "F08G5.4" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (IV:12427594..12428707)
Transcript overlap: 841 nt |
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Sliding Window |
Raw score: 778
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.244 |
Wormbase (BLAST) |
RNAi primary |
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External "F08G5.4" Links |
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Gene Inhibited |
T11F9.9 (col-157) |
Description of "T11F9.9" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
Sliding Window |
Raw score: 137
Relative score: 0.176 (Best raw score= for Gene )
Specificity index: 0.043 |
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External "T11F9.9" Links |
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Gene Inhibited |
B0222.8 (col-10) |
Description of "B0222.8" |
col-10 encodes a collagen protein; expressed exclusively in hypodermal cells |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
Sliding Window |
Raw score: 63
Specificity index: 0.02 |
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External "B0222.8" Links |
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Gene Inhibited |
T06E4.6 (col-146) |
Description of "T06E4.6" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 385
Specificity index: 0.121 |
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External "T06E4.6" Links |
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Gene Inhibited |
EGAP7.1 (dpy-3) |
Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 375
Relative score: 0.482 (Best raw score= for Gene )
Specificity index: 0.117 |
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External "EGAP7.1" Links |
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Gene Inhibited |
F14F7.1 (col-98) |
Description of "F14F7.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 241
Relative score: 0.31 (Best raw score= for Gene )
Specificity index: 0.075 |
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External "F14F7.1" Links |
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Gene Inhibited |
T07H6.3 (col-166) |
Description of "T07H6.3" |
Associated GO Term : structural constituent of cuticle |
Evidence for Inhibition |
Sliding Window |
Raw score: 98
Relative score: 0.126 (Best raw score= for Gene )
Specificity index: 0.031 |
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External "T07H6.3" Links |
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Gene Inhibited |
F57B7.3 (col-156) |
Description of "F57B7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 101
Relative score: 0.13 (Best raw score= for Gene )
Specificity index: 0.032 |
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External "F57B7.3" Links |
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Gene Inhibited |
T06E4.4 (col-147) |
Description of "T06E4.4" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 385
Relative score: 0.495 (Best raw score= for Gene )
Specificity index: 0.121 |
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External "T06E4.4" Links |
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Gene Inhibited |
T21B4.2 (col-85) |
Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 129
Relative score: 0.166 (Best raw score= for Gene )
Specificity index: 0.04 |
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External "T21B4.2" Links |
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Gene Inhibited |
F38A3.2 (ram-2) |
Description of "F38A3.2" |
ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 185
Relative score: 0.238 (Best raw score= for Gene )
Specificity index: 0.058 |
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External "F38A3.2" Links |
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Gene Inhibited |
B0222.6 (col-144) |
Description of "B0222.6" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 63
Relative score: 0.081 (Best raw score= for Gene )
Specificity index: 0.02 |
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External "B0222.6" Links |
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Gene Inhibited |
Y51H4A.9 (col-137) |
Description of "Y51H4A.9" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 110
Relative score: 0.141 (Best raw score= for Gene )
Specificity index: 0.034 |
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External "Y51H4A.9" Links |
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Gene Inhibited |
C09G5.5 (col-80) |
Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 144
Relative score: 0.185 (Best raw score= for Gene )
Specificity index: 0.045 |
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External "C09G5.5" Links |
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JA:F08G5.4 Phenotypes |
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Phenotype |
WT
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JA:F08G5.4 Experiment Details |
Ace View |
Laboratory |
JA |
RNAi Reagent & Type |
sjj_F08G5.4 (PCR_reagent) |
Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
Date |
2003-1-10 |
Gene Plot of T11F9.9 |
Browse using GBrowse
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Gene Plot of T06E4.6 |
Browse using GBrowse
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Gene Plot of B0222.8 |
Browse using GBrowse
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Gene Plot of EGAP7.1 |
Browse using GBrowse
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Gene Plot of F08G5.4 |
Browse using GBrowse
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Gene Plot of F14F7.1 |
Browse using GBrowse
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Gene Plot of T06E4.4 |
Browse using GBrowse
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Gene Plot of T07H6.3 |
Browse using GBrowse
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Gene Plot of F57B7.3 |
Browse using GBrowse
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Gene Plot of F38A3.2 |
Browse using GBrowse
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Gene Plot of T21B4.2 |
Browse using GBrowse
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Gene Plot of Y51H4A.9 |
Browse using GBrowse
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Gene Plot of B0222.6 |
Browse using GBrowse
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Gene Plot of C09G5.5 |
Browse using GBrowse
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