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RNAi Experiment: JA:F21C3.3 Ace View of JA:F21C3.3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F21C3.3 (tag-202)
Description of "F21C3.3"  This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial.
KOG Annotation  Zinc-binding protein of the histidine triad (HIT) family
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:7279687..7280635)
Transcript overlap: 393 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 330
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.835
Wormbase (BLAST) RNAi primary
External "F21C3.3" Links  Wormbase NCBI
Gene Inhibited  F21C3.4 (rde-2)
Description of "F21C3.4"  Uncloned locus that is required for the functional silencing of chromosomal loci by transgenes (cosuppression) and promotes the effects of RNAi in a step after the formation of a heritable interfering agent, also affects X-chromosome nondisjunction and transposon activation; functions downstream of rde-1 in the RNAi pathway most effective against RNAi against germline but not somatically expressed genes.
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:7279687..7280635)
Transcript overlap: 86 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 65
Relative score: 0.197 (Best raw score= for Gene )
Specificity index: 0.165
External "F21C3.4" Links  Wormbase NCBI
JA:F21C3.3 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F21C3.3 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F21C3.3 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of F21C3.4 Browse using GBrowse
Gene Graph
Gene Plot of F21C3.3 Browse using GBrowse
Gene Graph