RNAi Card Page

RNAi Experiment: JA:F36A4.10

Genes Inhibited

Gene Inhibited

Description of "F36A4.10"

col-34 encodes a cuticle collagen protein and is a critical component of male tail cuticle organization affecting ray morphology.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

ePCR	Status: Unique_ePCR (IV:4243473..4244625) Transcript overlap: 961 nt
Sliding Window	Raw score: 877 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.361
Wormbase (BLAST)	RNAi primary

External "F36A4.10" Links

Gene Inhibited

D2024.8 (col-114)

Description of "D2024.8"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 135
Relative score: 0.154 (Best raw score= for Gene )
Specificity index: 0.056

External "D2024.8" Links

Gene Inhibited

T13B5.4 (col-40)

Description of "T13B5.4"

col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 82
Relative score: 0.094 (Best raw score= for Gene )
Specificity index: 0.034

External "T13B5.4" Links

Gene Inhibited

Y54E10BL.2 (col-48)

Description of "Y54E10BL.2"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 287
Relative score: 0.327 (Best raw score= for Gene )
Specificity index: 0.118

External "Y54E10BL.2" Links

Gene Inhibited

ZC513.8 (col-43)

Description of "ZC513.8"

col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 79
Relative score: 0.09 (Best raw score= for Gene )
Specificity index: 0.032

External "ZC513.8" Links

Gene Inhibited

Y38C1BA.3 (col-109)

Description of "Y38C1BA.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 395
Relative score: 0.45 (Best raw score= for Gene )
Specificity index: 0.162

External "Y38C1BA.3" Links

Gene Inhibited

F11G11.12 (col-73)

Description of "F11G11.12"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 250
Specificity index: 0.103

External "F11G11.12" Links

Gene Inhibited

F11G11.10 (col-17)

Description of "F11G11.10"

col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle).

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 250
Relative score: 0.285 (Best raw score= for Gene )
Specificity index: 0.103

External "F11G11.10" Links

Gene Inhibited

T28F2.8 (col-51)

Description of "T28F2.8"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins