RNAi Experiment: JA:F36A4.10 |
Ace View of JA:F36A4.10
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Genes Inhibited |
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Gene Inhibited |
F36A4.10 (col-34) |
Description of "F36A4.10" |
col-34 encodes a cuticle collagen protein and is a critical component of male tail cuticle organization affecting ray morphology. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (IV:4243473..4244625)
Transcript overlap: 961 nt |
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Sliding Window |
Raw score: 877
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.361 |
Wormbase (BLAST) |
RNAi primary |
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External "F36A4.10" Links |
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Gene Inhibited |
D2024.8 (col-114) |
Description of "D2024.8" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
Sliding Window |
Raw score: 135
Relative score: 0.154 (Best raw score= for Gene )
Specificity index: 0.056 |
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External "D2024.8" Links |
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Gene Inhibited |
T13B5.4 (col-40) |
Description of "T13B5.4" |
col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 82
Relative score: 0.094 (Best raw score= for Gene )
Specificity index: 0.034 |
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External "T13B5.4" Links |
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Gene Inhibited |
Y54E10BL.2 (col-48) |
Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
Sliding Window |
Raw score: 287
Relative score: 0.327 (Best raw score= for Gene )
Specificity index: 0.118 |
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External "Y54E10BL.2" Links |
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Gene Inhibited |
ZC513.8 (col-43) |
Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 79
Relative score: 0.09 (Best raw score= for Gene )
Specificity index: 0.032 |
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External "ZC513.8" Links |
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Gene Inhibited |
Y38C1BA.3 (col-109) |
Description of "Y38C1BA.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
Sliding Window |
Raw score: 395
Relative score: 0.45 (Best raw score= for Gene )
Specificity index: 0.162 |
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External "Y38C1BA.3" Links |
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Gene Inhibited |
F11G11.12 (col-73) |
Description of "F11G11.12" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 250
Specificity index: 0.103 |
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External "F11G11.12" Links |
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Gene Inhibited |
F11G11.10 (col-17) |
Description of "F11G11.10" |
col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle). |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 250
Relative score: 0.285 (Best raw score= for Gene )
Specificity index: 0.103 |
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External "F11G11.10" Links |
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Gene Inhibited |
T28F2.8 (col-51) |
Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 76
Relative score: 0.087 (Best raw score= for Gene )
Specificity index: 0.031 |
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External "T28F2.8" Links |
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JA:F36A4.10 Phenotypes |
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Phenotype |
WT
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JA:F36A4.10 Experiment Details |
Ace View |
Laboratory |
JA |
RNAi Reagent & Type |
sjj_F36A4.10 (PCR_reagent) |
Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
Date |
2003-1-10 |
Gene Plot of D2024.8 |
Browse using GBrowse
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Gene Plot of F36A4.10 |
Browse using GBrowse
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Gene Plot of Y54E10BL.2 |
Browse using GBrowse
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Gene Plot of T13B5.4 |
Browse using GBrowse
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Gene Plot of ZC513.8 |
Browse using GBrowse
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Gene Plot of Y38C1BA.3 |
Browse using GBrowse
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Gene Plot of F11G11.12 |
Browse using GBrowse
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Gene Plot of F11G11.10 |
Browse using GBrowse
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Gene Plot of T28F2.8 |
Browse using GBrowse
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