Link to F36A4.10RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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F38A3.1Link to T28F2.8Link to K09H9.3Link to C09G5.5geneMap Link to ZC513.3Link to ZC513.8RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:F36A4.10 Ace View of JA:F36A4.10
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F36A4.10 (col-34)
Description of "F36A4.10"  col-34 encodes a cuticle collagen protein and is a critical component of male tail cuticle organization affecting ray morphology.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:4243473..4244625)
Transcript overlap: 961 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 877
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.361
Wormbase (BLAST) RNAi primary
External "F36A4.10" Links  Wormbase NCBI
Gene Inhibited  D2024.8 (col-114)
Description of "D2024.8"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 135
Relative score: 0.154 (Best raw score= for Gene )
Specificity index: 0.056
External "D2024.8" Links  Wormbase NCBI
Gene Inhibited  T13B5.4 (col-40)
Description of "T13B5.4"  col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 82
Relative score: 0.094 (Best raw score= for Gene )
Specificity index: 0.034
External "T13B5.4" Links  Wormbase NCBI
Gene Inhibited  Y54E10BL.2 (col-48)
Description of "Y54E10BL.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 287
Relative score: 0.327 (Best raw score= for Gene )
Specificity index: 0.118
External "Y54E10BL.2" Links  Wormbase NCBI
Gene Inhibited  ZC513.8 (col-43)
Description of "ZC513.8"  col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 79
Relative score: 0.09 (Best raw score= for Gene )
Specificity index: 0.032
External "ZC513.8" Links  Wormbase NCBI
Gene Inhibited  Y38C1BA.3 (col-109)
Description of "Y38C1BA.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 395
Relative score: 0.45 (Best raw score= for Gene )
Specificity index: 0.162
External "Y38C1BA.3" Links  Wormbase NCBI
Gene Inhibited  F11G11.12 (col-73)
Description of "F11G11.12"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 250
Specificity index: 0.103
External "F11G11.12" Links  Wormbase NCBI
Gene Inhibited  F11G11.10 (col-17)
Description of "F11G11.10"  col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle).
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 250
Relative score: 0.285 (Best raw score= for Gene )
Specificity index: 0.103
External "F11G11.10" Links  Wormbase NCBI
Gene Inhibited  T28F2.8 (col-51)
Description of "T28F2.8"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 76
Relative score: 0.087 (Best raw score= for Gene )
Specificity index: 0.031
External "T28F2.8" Links  Wormbase NCBI
JA:F36A4.10 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F36A4.10 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F36A4.10 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of D2024.8 Browse using GBrowse
Gene Graph
Gene Plot of F36A4.10 Browse using GBrowse
Gene Graph
Gene Plot of Y54E10BL.2 Browse using GBrowse
Gene Graph
Gene Plot of T13B5.4 Browse using GBrowse
Gene Graph
Gene Plot of ZC513.8 Browse using GBrowse
Gene Graph
Gene Plot of Y38C1BA.3 Browse using GBrowse
Gene Graph
Gene Plot of F11G11.12 Browse using GBrowse
Gene Graph
Gene Plot of F11G11.10 Browse using GBrowse
Gene Graph
Gene Plot of T28F2.8 Browse using GBrowse
Gene Graph