| RNAi Experiment: JA:F38A3.2 |
Ace View of JA:F38A3.2
|
| Genes Inhibited |
 |
| Gene Inhibited |
F38A3.2 (ram-2) |
| Description of "F38A3.2" |
ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (II:11015182..11016760)
Transcript overlap: 1043 nt |
|
| Sliding Window |
Raw score: 980
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.338 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F38A3.2" Links |
  |
| Gene Inhibited |
T15B7.3 (col-143) |
| Description of "T15B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 378
Relative score: 0.386 (Best raw score= for Gene )
Specificity index: 0.13 |
|
| External "T15B7.3" Links |
|
| Gene Inhibited |
F56B3.1 (col-103) |
| Description of "F56B3.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 197
Relative score: 0.201 (Best raw score= for Gene )
Specificity index: 0.068 |
|
| External "F56B3.1" Links |
|
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 317
Relative score: 0.323 (Best raw score= for Gene )
Specificity index: 0.109 |
|
| External "EGAP7.1" Links |
|
| Gene Inhibited |
M18.1 (col-129) |
| Description of "M18.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 136
Relative score: 0.139 (Best raw score= for Gene )
Specificity index: 0.047 |
|
| External "M18.1" Links |
|
| Gene Inhibited |
F57B1.4 (col-160) |
| Description of "F57B1.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 141
Relative score: 0.144 (Best raw score= for Gene )
Specificity index: 0.049 |
|
| External "F57B1.4" Links |
|
| Gene Inhibited |
Y2H9A.3 (col-162) |
| Description of "Y2H9A.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 243
Relative score: 0.248 (Best raw score= for Gene )
Specificity index: 0.084 |
|
| External "Y2H9A.3" Links |
|
| Gene Inhibited |
C34H4.4 (col-107) |
| Description of "C34H4.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 267
Relative score: 0.092 (Best raw score= for Gene )
Specificity index: 0.031 |
|
| External "C34H4.4" Links |
|
| Gene Inhibited |
C09G5.4 (col-39) |
| Description of "C09G5.4" |
col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 254
Relative score: 0.259 (Best raw score= for Gene )
Specificity index: 0.088 |
|
| External "C09G5.4" Links |
|
| Gene Inhibited |
T28F2.8 (col-51) |
| Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 165
Relative score: 0.168 (Best raw score= for Gene )
Specificity index: 0.057 |
|
| External "T28F2.8" Links |
|
| JA:F38A3.2 Phenotypes |
|
|
| Phenotype |
WT
|
| JA:F38A3.2 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_F38A3.2 (PCR_reagent) |
| Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
| Date |
2003-1-10 |
| Gene Plot of T15B7.3 |
Browse using GBrowse
|
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| Gene Plot of F56B3.1 |
Browse using GBrowse
|
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| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
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| Gene Plot of M18.1 |
Browse using GBrowse
|
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| Gene Plot of F57B1.4 |
Browse using GBrowse
|
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| Gene Plot of Y2H9A.3 |
Browse using GBrowse
|
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| Gene Plot of F38A3.2 |
Browse using GBrowse
|
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| Gene Plot of C34H4.4 |
Browse using GBrowse
|
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| Gene Plot of C09G5.4 |
Browse using GBrowse
|
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| Gene Plot of T28F2.8 |
Browse using GBrowse
|
 |
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