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RNAi Experiment: JA:F40F9.2 Ace View of JA:F40F9.2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F40F9.2 (tag-120)
Description of "F40F9.2"  tag-120 encodes a predicted transmembrane protein; as loss of tag-120 activity via RNAi does not result in any abnormalities, the precise role of TAG-120 in C. elegans development and/or behavior is not yet known; however, TAG-120 is homologous to a Drosophila NMDA receptor-associated protein and mammalian transmembrane proteins that function in Fas-mediated cell death, so TAG-120 may play a role in neuronal functions and/or apoptosis; a tag-120 reporter fusion is expressed in the nervous system, pharyngeal muscles, and to a lesser extent in the excretory system.
KOG Annotation  N-methyl-D-aspartate receptor glutamate-binding subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (V:9710142..9711832)
Transcript overlap: 964 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 880
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.803
Wormbase (BLAST) RNAi primary
External "F40F9.2" Links  Wormbase NCBI
Gene Inhibited  F40F9.1 (xbx-6)
KOG Annotation  N-methyl-D-aspartate receptor glutamate-binding subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (V:9710142..9711832)
Transcript overlap: 237 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 216
Relative score: 0.245 (Best raw score= for Gene )
Specificity index: 0.197
External "F40F9.1" Links  Wormbase NCBI
JA:F40F9.2 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F40F9.2 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F40F9.2 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of F40F9.2 Browse using GBrowse
Gene Graph
Gene Plot of F40F9.1 Browse using GBrowse
Gene Graph