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RNAi Experiment: JA:F43G9.11 Ace View of JA:F43G9.11
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F43G9.11 (ces-1)
Description of "F43G9.11"  ces-1 encodes a C2H2-type zinc finger transcription factor that is a member of the Snail family of proteins that includes Drosophila Scratch, Snail, and Slug, and human SNAIL and SLUG; although the normal function of CES-1 is not fully understood, gain-of-function mutations indicate that CES-1 can function as a transcriptional repressor that blocks programmed cell death in specific neurons by inhibiting expression of the cell-death activator EGL-1; in regulating EGL-1 expression, CES-1 appears to antagonize the transcriptional activity of the bHLH proteins, HLH-2 and HLH-3; despite its cell-type specific role in apoptosis, CES-1 expression is reportedly detected in many embryonic nuclei from the 100-cell stage of embryogenesis through the beginning of morphogenesis, with some CES-1 expression remaining at later embryonic stages; genetic studies indicate that CES-1 is negatively regulated by the bZIP transcription factor CES-2, which can bind CES-1 upstream sequences in vitro and thus may directly regulate CES-1 transcription in vivo
KOG Annotation  C2H2-type Zn-finger protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:8633912..8636069)
Transcript overlap: 813 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 687
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F43G9.11" Links  Wormbase NCBI
JA:F43G9.11 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F43G9.11 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F43G9.11 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of F43G9.11 Browse using GBrowse
Gene Graph