Link to F53E10.1.2Link to F53E10.1.1Link to W02H5.5RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F53E10.1.1Link to F53E10.1.2Link to W02H5.5Link to W02H5.6RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y116A8C.41RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to T02H6.3RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y54F10AM.7RNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F22B8.7RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y54B9A.1RNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: JA:F53E10.1 Ace View of JA:F53E10.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F53E10.1
KOG Annotation  Uncharacterized Fe-S protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (V:2617023..2618641)
Transcript overlap: 840 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 756
Relative score: 0.627 (Best raw score= for Gene )
Specificity index: 0.277
Wormbase (BLAST) RNAi primary
External "F53E10.1" Links  Wormbase NCBI
Gene Inhibited  W02H5.5
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (V:2617023..2618641)
Transcript overlap: 324 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 282
Relative score: 0.263 (Best raw score= for Gene )
Specificity index: 0.116
Wormbase (BLAST) RNAi primary
External "W02H5.5" Links  Wormbase NCBI
Gene Inhibited  Y116A8C.41
Description of "Y116A8C.41"  Associated GO Term : G-protein coupled receptor activity
Evidence for Inhibition 
Sliding Window Raw score: 75
Relative score: 0.07 (Best raw score= for Gene )
Specificity index: 0.031
External "Y116A8C.41" Links  Wormbase NCBI
Gene Inhibited  T02H6.3
Evidence for Inhibition 
Sliding Window Raw score: 1071
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.441
External "T02H6.3" Links  Wormbase NCBI
Gene Inhibited  Y54F10AM.7
Evidence for Inhibition 
Sliding Window Raw score: 152
Relative score: 0.142 (Best raw score= for Gene )
Specificity index: 0.063
External "Y54F10AM.7" Links  Wormbase NCBI
Gene Inhibited  F22B8.7
KOG Annotation  Uncharacterized Fe-S protein
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 74
Relative score: 0.069 (Best raw score= for Gene )
Specificity index: 0.031
Wormbase (BLAST) RNAi secondary
External "F22B8.7" Links  Wormbase NCBI
Gene Inhibited  Y54B9A.1
Evidence for Inhibition 
Sliding Window Raw score: 100
Relative score: 0.093 (Best raw score= for Gene )
Specificity index: 0.041
External "Y54B9A.1" Links  Wormbase NCBI
JA:F53E10.1 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F53E10.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F53E10.1 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y116A8C.41 Browse using GBrowse
Gene Graph
Gene Plot of T02H6.3 Browse using GBrowse
Gene Graph
Gene Plot of Y54F10AM.7 Browse using GBrowse
Gene Graph
Gene Plot of W02H5.5 Browse using GBrowse
Gene Graph
Gene Plot of F22B8.7 Browse using GBrowse
Gene Graph
Gene Plot of F53E10.1 Browse using GBrowse
Gene Graph
Gene Plot of Y54B9A.1 Browse using GBrowse
Gene Graph