| RNAi Experiment: JA:F54C9.4 |
Ace View of JA:F54C9.4
|
| Genes Inhibited |
 |
| Gene Inhibited |
F54C9.4 (col-38) |
| Description of "F54C9.4" |
col-38 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) required for normal body morphology. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (II:8567920..8568926)
Transcript overlap: 824 nt |
|
| Sliding Window |
Raw score: 761
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.336 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F54C9.4" Links |
  |
| Gene Inhibited |
F23H12.4 (sqt-3) |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 158
Relative score: 0.208 (Best raw score= for Gene )
Specificity index: 0.07 |
|
| External "F23H12.4" Links |
|
| Gene Inhibited |
H06A10.2 (col-185) |
| Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 202
Relative score: 0.265 (Best raw score= for Gene )
Specificity index: 0.089 |
|
| External "H06A10.2" Links |
|
| Gene Inhibited |
F54B11.2 (col-44) |
| Description of "F54B11.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 306
Relative score: 0.402 (Best raw score= for Gene )
Specificity index: 0.135 |
|
| External "F54B11.2" Links |
|
| Gene Inhibited |
Y54E10BL.2 (col-48) |
| Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 263
Relative score: 0.346 (Best raw score= for Gene )
Specificity index: 0.116 |
|
| External "Y54E10BL.2" Links |
|
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 378
Relative score: 0.497 (Best raw score= for Gene )
Specificity index: 0.167 |
|
| External "EGAP7.1" Links |
|
| Gene Inhibited |
C09G5.5 (col-80) |
| Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 197
Relative score: 0.259 (Best raw score= for Gene )
Specificity index: 0.087 |
|
| External "C09G5.5" Links |
|
| JA:F54C9.4 Phenotypes |
|
|
| Adult |
Dpy
|
| JA:F54C9.4 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_F54C9.4 (PCR_reagent) |
| Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
| Date |
2003-1-10 |
| Gene Plot of F23H12.4 |
Browse using GBrowse
|
 |
| Gene Plot of F54B11.2 |
Browse using GBrowse
|
 |
| Gene Plot of H06A10.2 |
Browse using GBrowse
|
 |
| Gene Plot of Y54E10BL.2 |
Browse using GBrowse
|
 |
| Gene Plot of F54C9.4 |
Browse using GBrowse
|
 |
| Gene Plot of C09G5.5 |
Browse using GBrowse
|
 |
| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
 |
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