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ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y41E3.3Link to Y41E3.2RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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ReagentRNAi ReagentLink to W05B2.6Link to W05B2.1Link to F30B5.1Link to Y38C1BA.3Link to F54B11.2geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:F54D1.3 Ace View of JA:F54D1.3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F54D1.3 (col-127)
Description of "F54D1.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:11264817..11266012)
Transcript overlap: 933 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 870
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.326
Wormbase (BLAST) RNAi primary
External "F54D1.3" Links  Wormbase NCBI
Gene Inhibited  T06E4.4 (col-147)
Description of "T06E4.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 430
Relative score: 0.494 (Best raw score= for Gene )
Specificity index: 0.161
External "T06E4.4" Links  Wormbase NCBI
Gene Inhibited  B0222.7 (col-145)
Description of "B0222.7"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 73
Relative score: 0.084 (Best raw score= for Gene )
Specificity index: 0.027
External "B0222.7" Links  Wormbase NCBI
Gene Inhibited  F54D1.2 (col-126)
Description of "F54D1.2"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 843
Relative score: 0.969 (Best raw score= for Gene )
Specificity index: 0.315
Wormbase (BLAST) RNAi primary
External "F54D1.2" Links  Wormbase NCBI
Gene Inhibited  F54B11.2 (col-44)
Description of "F54B11.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 107
Relative score: 0.123 (Best raw score= for Gene )
Specificity index: 0.04
External "F54B11.2" Links  Wormbase NCBI
Gene Inhibited  Y41E3.2 (dpy-4)
Description of "Y41E3.2"  dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 349
Relative score: 0.401 (Best raw score= for Gene )
Specificity index: 0.131
External "Y41E3.2" Links  Wormbase NCBI
JA:F54D1.3 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F54D1.3 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F54D1.3 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of B0222.7 Browse using GBrowse
Gene Graph
Gene Plot of T06E4.4 Browse using GBrowse
Gene Graph
Gene Plot of F54D1.2 Browse using GBrowse
Gene Graph
Gene Plot of F54B11.2 Browse using GBrowse
Gene Graph
Gene Plot of Y41E3.2 Browse using GBrowse
Gene Graph
Gene Plot of F54D1.3 Browse using GBrowse
Gene Graph