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RNAi Experiment: JA:F55H2.3 Ace View of JA:F55H2.3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K08E7.3 (let-99)
Description of "K08E7.3"  let-99 encodes a protein with a DEP domain (Domain found in Dishevelled, Egl-10, and Pleckstrin); LET-99 has no obvious homologs in non-nematodes, but has a truncated paralog (LRG-1) in C. elegans; LET-99 is required for the mitotic spindle to be properly oriented with respect to the axis of cellular polarity, both during anterior migration and rotation of the nuclear-centrosome complex and during anaphase; let-99 mutants exhibit hyperactive nuclear movement and abnormal anaphase spindle pole behavior; LET-99 is mislocalized in par-2 and par-3 mutants; like other proteins containing DEP domains, LET-99 may act as part of a G protein signalling pathway (e.g., the one controlling spindle position).
Evidence for Inhibition 
Sliding Window Raw score: 135
Relative score: 0.345 (Best raw score= for Gene )
Specificity index: 0.257
Wormbase (BLAST) RNAi primary
External "K08E7.3" Links  Wormbase NCBI
Gene Inhibited  F55H2.4 (lrg-1)
Description of "F55H2.4"  lrg-1 encodes a truncated paralog of let-99, a protein with a DEP domain (Domain found in Dishevelled, Egl-10, and Pleckstrin); lrg-1(RNAi) animals have no obvious phenotype; since the nucleotide similarity of lrg-1 to let-99 extends beyond the lrg-1 CDS, and since lrg-1 has no obvious function in RNAi assays, this gene may be decaying towards pseudogene status.
Evidence for Inhibition 
Sliding Window Raw score: 391
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.743
Wormbase (BLAST) RNAi primary
External "F55H2.4" Links  Wormbase NCBI
JA:F55H2.3 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F55H2.3 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F55H2.3 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of K08E7.3 Browse using GBrowse
Gene Graph
Gene Plot of F55H2.4 Browse using GBrowse
Gene Graph