RNAi Experiment: JA:F57B1.4 |
Ace View of JA:F57B1.4
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Genes Inhibited |
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Gene Inhibited |
F57B1.4 (col-160) |
Description of "F57B1.4" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (V:13203408..13204506)
Transcript overlap: 880 nt |
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Sliding Window |
Raw score: 817
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.337 |
Wormbase (BLAST) |
RNAi primary |
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External "F57B1.4" Links |
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Gene Inhibited |
T15B7.3 (col-143) |
Description of "T15B7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 385
Relative score: 0.471 (Best raw score= for Gene )
Specificity index: 0.159 |
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External "T15B7.3" Links |
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Gene Inhibited |
F15H10.1 (col-12) |
Description of "F15H10.1" |
col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 143
Relative score: 0.175 (Best raw score= for Gene )
Specificity index: 0.059 |
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External "F15H10.1" Links |
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Gene Inhibited |
F56B3.1 (col-103) |
Description of "F56B3.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 64
Relative score: 0.078 (Best raw score= for Gene )
Specificity index: 0.026 |
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External "F56B3.1" Links |
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Gene Inhibited |
Y41E3.2 (dpy-4) |
Description of "Y41E3.2" |
dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 80
Relative score: 0.098 (Best raw score= for Gene )
Specificity index: 0.033 |
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External "Y41E3.2" Links |
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Gene Inhibited |
C44C10.1 (col-180) |
Description of "C44C10.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 240
Relative score: 0.294 (Best raw score= for Gene )
Specificity index: 0.099 |
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External "C44C10.1" Links |
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Gene Inhibited |
F15H10.2 (col-13) |
Description of "F15H10.2" |
col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 116
Relative score: 0.142 (Best raw score= for Gene )
Specificity index: 0.048 |
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External "F15H10.2" Links |
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Gene Inhibited |
F57B1.3 (col-159) |
Description of "F57B1.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 441
Relative score: 0.54 (Best raw score= for Gene )
Specificity index: 0.182 |
Wormbase (BLAST) |
RNAi primary |
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External "F57B1.3" Links |
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Gene Inhibited |
T28F2.8 (col-51) |
Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 141
Relative score: 0.173 (Best raw score= for Gene )
Specificity index: 0.058 |
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External "T28F2.8" Links |
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JA:F57B1.4 Phenotypes |
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Phenotype |
WT
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JA:F57B1.4 Experiment Details |
Ace View |
Laboratory |
JA |
RNAi Reagent & Type |
sjj_F57B1.4 (PCR_reagent) |
Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
Date |
2003-1-10 |
Gene Plot of T15B7.3 |
Browse using GBrowse
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Gene Plot of F56B3.1 |
Browse using GBrowse
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Gene Plot of F15H10.1 |
Browse using GBrowse
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Gene Plot of Y41E3.2 |
Browse using GBrowse
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Gene Plot of C44C10.1 |
Browse using GBrowse
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Gene Plot of F57B1.4 |
Browse using GBrowse
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Gene Plot of F15H10.2 |
Browse using GBrowse
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Gene Plot of F57B1.3 |
Browse using GBrowse
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Gene Plot of T28F2.8 |
Browse using GBrowse
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