RNAi Card Page

RNAi Experiment: JA:F57B1.4

Ace View of JA:F57B1.4

Genes Inhibited

Gene Inhibited

F57B1.4 (col-160)

Description of "F57B1.4"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

ePCR	Status: Unique_ePCR (V:13203408..13204506) Transcript overlap: 880 nt
Sliding Window	Raw score: 817 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.337
Wormbase (BLAST)	RNAi primary

External "F57B1.4" Links

Gene Inhibited

T15B7.3 (col-143)

Description of "T15B7.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 385
Relative score: 0.471 (Best raw score= for Gene )
Specificity index: 0.159

External "T15B7.3" Links

Gene Inhibited

F15H10.1 (col-12)

Description of "F15H10.1"

col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 143
Relative score: 0.175 (Best raw score= for Gene )
Specificity index: 0.059

External "F15H10.1" Links

Gene Inhibited

F56B3.1 (col-103)

Description of "F56B3.1"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 64
Relative score: 0.078 (Best raw score= for Gene )
Specificity index: 0.026

External "F56B3.1" Links

Gene Inhibited

Y41E3.2 (dpy-4)

Description of "Y41E3.2"

dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 80
Relative score: 0.098 (Best raw score= for Gene )
Specificity index: 0.033

External "Y41E3.2" Links

Gene Inhibited

C44C10.1 (col-180)

Description of "C44C10.1"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 240
Relative score: 0.294 (Best raw score= for Gene )
Specificity index: 0.099

External "C44C10.1" Links

Gene Inhibited

F15H10.2 (col-13)

Description of "F15H10.2"

col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 116
Relative score: 0.142 (Best raw score= for Gene )
Specificity index: 0.048

External "F15H10.2" Links

Gene Inhibited

F57B1.3 (col-159)

Description of "F57B1.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins