Link to F57B1.4.2Link to F57B1.4.1Link to F57B1.4.3RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:F57B1.4 Ace View of JA:F57B1.4
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F57B1.4 (col-160)
Description of "F57B1.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:13203408..13204506)
Transcript overlap: 880 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 817
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.337
Wormbase (BLAST) RNAi primary
External "F57B1.4" Links  Wormbase NCBI
Gene Inhibited  T15B7.3 (col-143)
Description of "T15B7.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 385
Relative score: 0.471 (Best raw score= for Gene )
Specificity index: 0.159
External "T15B7.3" Links  Wormbase NCBI
Gene Inhibited  F15H10.1 (col-12)
Description of "F15H10.1"  col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 143
Relative score: 0.175 (Best raw score= for Gene )
Specificity index: 0.059
External "F15H10.1" Links  Wormbase NCBI
Gene Inhibited  F56B3.1 (col-103)
Description of "F56B3.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 64
Relative score: 0.078 (Best raw score= for Gene )
Specificity index: 0.026
External "F56B3.1" Links  Wormbase NCBI
Gene Inhibited  Y41E3.2 (dpy-4)
Description of "Y41E3.2"  dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 80
Relative score: 0.098 (Best raw score= for Gene )
Specificity index: 0.033
External "Y41E3.2" Links  Wormbase NCBI
Gene Inhibited  C44C10.1 (col-180)
Description of "C44C10.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 240
Relative score: 0.294 (Best raw score= for Gene )
Specificity index: 0.099
External "C44C10.1" Links  Wormbase NCBI
Gene Inhibited  F15H10.2 (col-13)
Description of "F15H10.2"  col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 116
Relative score: 0.142 (Best raw score= for Gene )
Specificity index: 0.048
External "F15H10.2" Links  Wormbase NCBI
Gene Inhibited  F57B1.3 (col-159)
Description of "F57B1.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 441
Relative score: 0.54 (Best raw score= for Gene )
Specificity index: 0.182
Wormbase (BLAST) RNAi primary
External "F57B1.3" Links  Wormbase NCBI
Gene Inhibited  T28F2.8 (col-51)
Description of "T28F2.8"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 141
Relative score: 0.173 (Best raw score= for Gene )
Specificity index: 0.058
External "T28F2.8" Links  Wormbase NCBI
JA:F57B1.4 Phenotypes Help with Phenotypes
Phenotype  WT
JA:F57B1.4 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_F57B1.4 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of T15B7.3 Browse using GBrowse
Gene Graph
Gene Plot of F56B3.1 Browse using GBrowse
Gene Graph
Gene Plot of F15H10.1 Browse using GBrowse
Gene Graph
Gene Plot of Y41E3.2 Browse using GBrowse
Gene Graph
Gene Plot of C44C10.1 Browse using GBrowse
Gene Graph
Gene Plot of F57B1.4 Browse using GBrowse
Gene Graph
Gene Plot of F15H10.2 Browse using GBrowse
Gene Graph
Gene Plot of F57B1.3 Browse using GBrowse
Gene Graph
Gene Plot of T28F2.8 Browse using GBrowse
Gene Graph