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RNAi Experiment: JA:H12I13.d Ace View of JA:H12I13.d
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  H12I13.1
Description of "H12I13.1"  Associated GO Term : protein kinase activity
KOG Annotation  Serine/threonine kinase (haspin family)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:6062134..6064428)
Transcript overlap: 1779 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1695
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.944
Wormbase (BLAST) RNAi primary
External "H12I13.1" Links  Wormbase NCBI
Gene Inhibited  R05F9.3 (msp-32)
Description of "R05F9.3"  msp-32 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-32 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); the msp family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
Evidence for Inhibition 
Sliding Window Raw score: 101
Relative score: 0.06 (Best raw score= for Gene )
Specificity index: 0.056
External "R05F9.3" Links  Wormbase NCBI
JA:H12I13.d Phenotypes Help with Phenotypes
Phenotype  WT
JA:H12I13.d Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_H12I13.d (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of R05F9.3 Browse using GBrowse
Gene Graph
Gene Plot of H12I13.1 Browse using GBrowse
Gene Graph